Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi183g00016 ATGGTAGATATCCCACCTGGTTTTCGTTTCTTCCCAACTGAAGAAGAGCTTGTTAGCTTTTACCTAAAGAACAAACTTCAAGGAGAAAGAAATGCTTTTGGTAGGGTTATTCCTGTCATTGACATCAATGGCGTAGAACCATGGAATCTCCCTCCTCTTGCGGGAGAGCTATGCCGTGAAGATAAAGAGCAATGGTTTTTCTTTTCGCCGGGGCAAGAGAGAGAAGCAAGAGGAGGGAGGCCTAATAGAACAACTGGTTGTGGTTACTGGAAGGCAACAGGTTCTCCTGGTTATGTTTATTCTTCTGATAATAAGGTTATTGGAGTGAAGAAAACAATGGTGTTCTATAGAGGAAAAGCTCCTAGTGGAAGGAAAACTAAATGGAAGATGAATGAATACAGAGCCATTCAATTGTGTAACCAATCCAATACTGCCACACCTCAGTTAAGGCGAGAATTCAGCGTGTGTCGAGTATATGTGATATCAGGAAGTTTTAGATCATTTGACAGACGTCCATTAGAGAATGAAAGACATGATCGATTTCAAGTTAACCAGATCGATCAAAATTCATTTGTTGCCACGTGTACTAATCAAAATGCAAAAATGGATCATGCATCAAGTTCATTTGAAATTTCTCAATTAGGAGGATTCCAAAGTGTTTGTCTTCCAGAGGTTGGAGGAGGTTCAAATAGCAGTAATTGGAATGTAAATAACAATGGTGATAATGGGGATGAGGTTCAACTCCAAGAACCATTATGGGAATGGGAATGGGAACATTTTAGTTGGACTTAA 792 0.3977 MVDIPPGFRFFPTEEELVSFYLKNKLQGERNAFGRVIPVIDINGVEPWNLPPLAGELCREDKEQWFFFSPGQEREARGGRPNRTTGCGYWKATGSPGYVYSSDNKVIGVKKTMVFYRGKAPSGRKTKWKMNEYRAIQLCNQSNTATPQLRREFSVCRVYVISGSFRSFDRRPLENERHDRFQVNQIDQNSFVATCTNQNAKMDHASSSFEISQLGGFQSVCLPEVGGGSNSSNWNVNNNGDNGDEVQLQEPLWEWEWEHFSWT 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi183g00016 263 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Vivi183g00016 263 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Vivi183g00016 263 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Vivi183g00016 263 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
Vivi183g00016 263 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 197 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi183g00016 3 256 NAC Transcription Factor Family AT5G22380 52.713 1.29e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi183g00016 NAM 1.1e-30 No_clan