LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1834g00002	ATGGATAGAAAGGGAAATAATAGTAATAATGAGGGGGTTCGATATAGAGGTATTCGTATAAGACCATGGGGTAAGTTTGCAGCAGAAATTCGTGATCCAACAAGAAAGGGTACTCGTATTTGGCTTGGAACATTTGATTCTGCTGAGCAAGCTGCACGTGCTTATGATGCTGCTGCTTTTCATTTTCGTGGTCATAAAGCCATTCTCAACTTCCCAAATGAATATGCCCATTCTACTACTAGTTATTATATTCCAAACACTACTTCTACTACCTCAAATAATACATTGCCTAACTCTTCTTCCTATCAACAACAAGATGATGATGATATTCTAGATCAACTGGCTTGCTTGGACTACAAGTTGTTGGAAGAATTCCTTCATGGGAAGGATGATGCTGCAGTGGGTAGCTCTAGTAGACACGCGAGTGAATAG	432	0.3981	MDRKGNNSNNEGVRYRGIRIRPWGKFAAEIRDPTRKGTRIWLGTFDSAEQAARAYDAAAFHFRGHKAILNFPNEYAHSTTSYYIPNTTSTTSNNTLPNSSSYQQQDDDDILDQLACLDYKLLEEFLHGKDDAAVGSSSRHASE	143

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1834g00002	143	CDD	AP2	14	73	IPR001471	GO:0003700\|GO:0006355
	Vivi1834g00002	143	PANTHER	DNA-BINDING DOMAIN	9	104	IPR044808	GO:0003700\|GO:0009873
	Vivi1834g00002	143	Gene3D	AP2/ERF domain	13	73	IPR036955	GO:0003700\|GO:0006355
	Vivi1834g00002	143	ProSiteProfiles	AP2/ERF domain profile.	14	72	IPR001471	GO:0003700\|GO:0006355
	Vivi1834g00002	143	FunFam	Ethylene-responsive transcription factor 2	14	73	-	-
	Vivi1834g00002	143	SMART	rav1_2	14	78	IPR001471	GO:0003700\|GO:0006355
	Vivi1834g00002	143	SUPERFAMILY	DNA-binding domain	14	73	IPR016177	GO:0003677
	Vivi1834g00002	143	PRINTS	Ethylene responsive element binding protein signature	15	26	IPR001471	GO:0003700\|GO:0006355
	Vivi1834g00002	143	PRINTS	Ethylene responsive element binding protein signature	38	54	IPR001471	GO:0003700\|GO:0006355
	Vivi1834g00002	143	Pfam	AP2 domain	14	65	IPR001471	GO:0003700\|GO:0006355

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1834g00002	9	130	AP2-EREBP Transcription Factor Family	AT3G23230	49.194	2.74e-35	117

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Vivi1834g00002		AP2	1.9e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1834g00002	-		-	gmx:100778998	134.035