Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1828g00003 ATGAAATTTTATGCAAAAACATTGAACTCAATTCCAAATCTTTTACTTTGCCTTTCTCTAATAATCTCACTTTTCCTATTCCAAAGTCATGCCAATAGTTCCCAATATACAACAAGTATTGGTGTGATTATTGATGTTACTTCTGAAACAGGTAAACAACAGAAAACAGCCATGCAAATTGCAGCTCGAAGTTTCAATAACTATTCCAACAATCAAATTATAGTCCTTTTCTTTCGTGATTCTGGTAGAAACCCTTCACAAGCAGCTTCTGCTGCTGAAGAGTTAATAACTAAAGAGAAAGTTAAAGTGATTATTGGCTTGGAAACATGGCAAGAAGCAGCTCTTGTTGCTGACCTTGGAGCAAAGTTTCAAGTACCAATAATTTCATTTTCTGCTCCACCATTAGTCCCGTCATCATTAGTGCAACTTCGTTGGCCTTTCTTGATTCAAATGTCACAAAATCTTTCTGCACAAATGAACTTCATAGCTGATATGATCCATGCATTCAACTCTGAGAAAGTTATAGTTATTTATGAAGACAACCCTTATAGCAGTGATTCTGGAATGTTAAGCCTCTTATCCGACGCTCTCGAAAAGCTTAACTTGCAGATTGAGAATCTATTAGTTCTTCCACCGTTCACTTCTTTATCTGATCCAAAAGGGTTTGTTCTCGATGAATTGCTGAAGCTGTTGCCCTTAAAATCTCGTGTTTTTGTTGTACTTCAAGCGTCGTTGCCTATGGTGAACCATTTGTTTAGAGAAGCTAAGAAAATTGGATTATTGGAGAAAGAAGCATCTTGGATAATCACTGAGGAGATTACGAACATGTTGGACTACGTAGATAAATCTGTTTTATCATCTATGGAAGGTGTTTTGGGAATCAAAACCAACTATTCTACAAACTCTAGTGCTTATACTCATTTGCAGGAAAAATTTCAAGCTGAGAATACAGAAAAAGTTGAGTTCAAACCAATATCAAATGTTTTGCTAGCTTATGATAGCATCACAATTGTCACAAAGGCTTTGGAGAAAATGAATACTAATTCTAGTAGCTCAAAAATTTTACTGGAGAAAATGTTATCTTCCAATTTCAATGGCTTAATTGGTGATATAAGATTCAAAGAAAGACAACTATACTACACTCCAATGTTAAGAGTCATAAAAGTGGTTGGTAATGATAAGAAAGATATTGAATTGGACTTTTGGACACCAAAGTTGAAGTTTGCTAGATCTCTTAGAGAGAAAACAAGTGATGGTACTAAAGAAGAAAGCTTAAATGACTGTGTACCTAAGAAATGGAAAATACCAAATGATACAAACCCTTTACAAGTTGCAATTCCTATGAATCCTGCTTATGATACCTTTGTGAAAGTCTCTCAAAATCAAAATGCTACCGGTTTTTGCATTGAACTTTTTCAAGAGGTCCGAGAAATTCTGCGTTACCCGTATTCTGATCTTCCCTATAATTTTACCCCTTTCACCGAATCTTTTGATGATATTTTGCGTAAAGTACAAGATGAGACCTATGATGCTATTGTAGGAGATGTAACAATACTTGCCAGCAGGGCAAGGAATGTATCATTCACTCAACCATATACCGAATCGAGCTTATCGCTCATACTTCCCGCAGAAACTGATGATTCGGCATGGTTGTTTATGAAACCATTTAGCTTAGTAATGTGGATTGCAACTATTGGTATCCTCATCTACACAATGATTACCATTTGGTTCTTGGAACATCACTTGAATCCTGAATTCGGTGGACCATTGAAAACCCAAATCAGCACCACTCTGTGGTTTGCTTTTTCTTCTCTATTTTTTGCTCAGAGGGAGAAAATAAACAGCAACACAGCAAGAGTAGTAGTTGGAGTATGGTTATTTCTTGTGTTTGTTCTAACCTCAAGCTACACTGCAAATCTTTCATCATTGCTTACCGTCCAAAAATTGAGGTCAGATAGAGACATCGACTGGCTTAAACAGAAAAATCTATCAGTTGGTTGTTTTAACACCAGTAGCTTTGTAAAGGACTACTTGGTCAATGTCTACAATTTCCCTAGGCACCAAGTTGTAGATGTTGAGGATGAAGATGAGATTTTGGATAAATTCAAGAGCAAAAATATATCTGCTCTCTTTGTTGAGAGCCCATATGAGAAGGTTTTCATGAATAAAAACTGCAAAGATTACACTGCAACTACAGCAGCCTATAAATTTGGAGGAATGGGATTTGTATTTCAAAAAGATGCTCCATTGGCAAAAGACTTTTCTGAAGCAATTTTAACACTAGCAGAAAATGGAAAATTAAAAGCTTTGGAAGATAGATGGTTAACACCTTCCAATAAATGTTCAAACAACTCACCGTCTTCAGAAGAAACTGAGAGTCTGACTTTTGACAAATTCTGGGGACTCTATGTCATATGTGCTGCCACTTCCACCATCTGCTTACTAGTAGCTTTGTTGAAGAAGTGTTTACATAAAGATAACCACTATGAAGAAGCTGATCAGCATCCTCAAGGAAGTGTAATCTCCGAATCTGATGATGATAATAACAATAATGATTCTCAGAGAGTAATTAGAGTTGGCACAGGTTTAAACATTGAGAATCTCATGAGTTTAAATAAATCTGCAACCTTTGGTGTACGTCGTCGAAATTCGCCAAAATTGGAGAGTATAAGCATTTCTGATGAACGGAGCGATCTGCCTCGCTCCCGGTCAGCTGCTATGCCATAG 2727 0.366 MKFYAKTLNSIPNLLLCLSLIISLFLFQSHANSSQYTTSIGVIIDVTSETGKQQKTAMQIAARSFNNYSNNQIIVLFFRDSGRNPSQAASAAEELITKEKVKVIIGLETWQEAALVADLGAKFQVPIISFSAPPLVPSSLVQLRWPFLIQMSQNLSAQMNFIADMIHAFNSEKVIVIYEDNPYSSDSGMLSLLSDALEKLNLQIENLLVLPPFTSLSDPKGFVLDELLKLLPLKSRVFVVLQASLPMVNHLFREAKKIGLLEKEASWIITEEITNMLDYVDKSVLSSMEGVLGIKTNYSTNSSAYTHLQEKFQAENTEKVEFKPISNVLLAYDSITIVTKALEKMNTNSSSSKILLEKMLSSNFNGLIGDIRFKERQLYYTPMLRVIKVVGNDKKDIELDFWTPKLKFARSLREKTSDGTKEESLNDCVPKKWKIPNDTNPLQVAIPMNPAYDTFVKVSQNQNATGFCIELFQEVREILRYPYSDLPYNFTPFTESFDDILRKVQDETYDAIVGDVTILASRARNVSFTQPYTESSLSLILPAETDDSAWLFMKPFSLVMWIATIGILIYTMITIWFLEHHLNPEFGGPLKTQISTTLWFAFSSLFFAQREKINSNTARVVVGVWLFLVFVLTSSYTANLSSLLTVQKLRSDRDIDWLKQKNLSVGCFNTSSFVKDYLVNVYNFPRHQVVDVEDEDEILDKFKSKNISALFVESPYEKVFMNKNCKDYTATTAAYKFGGMGFVFQKDAPLAKDFSEAILTLAENGKLKALEDRWLTPSNKCSNNSPSSEETESLTFDKFWGLYVICAATSTICLLVALLKKCLHKDNHYEEADQHPQGSVISESDDDNNNNDSQRVIRVGTGLNIENLMSLNKSATFGVRRRNSPKLESISISDERSDLPRSRSAAMP 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1828g00003 908 PIRSF IGluLR_plant 9 905 IPR017103 -
Vivi1828g00003 908 Gene3D - 550 687 - -
Vivi1828g00003 908 MobiDBLite consensus disorder prediction 888 908 - -
Vivi1828g00003 908 Pfam Receptor family ligand binding region 54 389 IPR001828 -
Vivi1828g00003 908 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 844 IPR015683 -
Vivi1828g00003 908 Coils Coil 190 210 - -
Vivi1828g00003 908 Gene3D - 292 378 - -
Vivi1828g00003 908 Gene3D - 437 549 - -
Vivi1828g00003 908 SUPERFAMILY Periplasmic binding protein-like I 39 393 IPR028082 -
Vivi1828g00003 908 FunFam Glutamate receptor 158 322 - -
Vivi1828g00003 908 SMART GluR_14 441 777 IPR001320 GO:0015276|GO:0016020
Vivi1828g00003 908 CDD PBP1_GABAb_receptor_plant 39 412 IPR044440 -
Vivi1828g00003 908 Gene3D - 36 210 - -
Vivi1828g00003 908 Gene3D - 696 783 - -
Vivi1828g00003 908 MobiDBLite consensus disorder prediction 832 854 - -
Vivi1828g00003 908 Pfam Ligand-gated ion channel 777 808 IPR001320 GO:0015276|GO:0016020
Vivi1828g00003 908 Pfam Bacterial extracellular solute-binding proteins, family 3 448 776 IPR001638 -
Vivi1828g00003 908 MobiDBLite consensus disorder prediction 837 854 - -
Vivi1828g00003 908 SUPERFAMILY Periplasmic binding protein-like II 430 776 - -
Vivi1828g00003 908 FunFam Glutamate receptor 549 679 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1828g00003 20 840 Ion Channels AT2G29120 31.876 2.13e-123 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1828g00003 - - mtr:11441834 1233.39