Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1828g00002 ATGCATTGCCTTTCAACTATTCCCCAAACACAAGCAAGAATTTGGCTATTCTTTTTCTTACTCATTCCTTTTGTTCTCATTTATGGTTTCCAAAATGAGACGATGAATTCAGATAACAAAGTTATATCCATTGGGGTGATCATTGATGTTAATTCTCGTATAGGGAAAGAACAAGAAGTAGCCATGGACATTGCAGCCCAGAAATACAACAACATTTCAAAGGACTACAAGCTGTCTCTCTATTTTCAGAACTCCACCAAGGATACCCTCGGGGCCATCACACTTGCTGAAGAGATGATTAAGGTGCAAAAGGTGCAAGTGATTATAGGGATGCACACATGGCCAGAAGCAGGTATAGTAGCTGAAATAGGAAGGAAAACTCAAGTTCCTATCATATCTTTTGCAGCTCCTACCATAACGCCACCATTGATGAAAACTCGATGGCCTTTTCTGGTGAGACTAGCAAACAATGGTACAGCATATATAAAATGCATTGCAGACATAGTGCAAGCTTATAGCTGGAAAAGAGTAGTAGTAATCTACGAAGATGATGGATACGGGGGAAATTATGGGATGCTAGCCCTGCTAGCTGAGGCCCTTCAGGATGTGGATTCAATTATTGAACACAGCTTAGTCCTTCCCCCAATTTCTTCTATACATGATCCAGGAGAGCTAGTTAGTGAAGAGATGATTAAGTTAAAACAAACACAATCTCGGGTGTTCATAGTGCTGCAATCATCATTAGAAATGACAATCCATTTGTTCAAAGAAGCTTCAAAAGTTGGACTGGTGGATAAAGAATCAGTTTGGATAATCCCAGAGAGCATAACAAATTTGATGGACTCTATCAATAAATCTGCTATTTCCTATATGGAAGGAGCTTTAGGAATTAAAACCTACTACTCAGAGAGAAGCAAGGATTATCAAAACTTTGAGTTTCAGTTCAGGAGAACTTTTTGGTTAAAGAATCCAGAGGAAGATAACCGATACCCAGGATTTTATGCTCTACAAGCATATGATAGCATTAATATTGTAACTCAAGCAATCACCAGGATGACCAGTAGAAACAATAGCAGCCCAAAGAGTTTACTAAGAGAAATACAGTCTAGCAATTTTGTTGGTTTGAGTGGCCATATTCAACTTGAAGCTGGACAACTCATGCAGAAGAATCTTGTCTTAAGAATTGTAAATGTTGCTGGGAAGAGTTACAAGGAATTATGCTTTTGGACCGAGCAACATGGTTTCACTACAATCCCCCATACTGGACAGGGTGGAAATAAGGTTGCTGGAAATACAGAATGTTTCAGGGGTGTACGCTGGCCGGGGAATTTGGACCGTGATCCAAAGGGGTGGAAGATGCCTACCAAACAAAATCCACTGAAAATTGCAGTCAGAAGCAGAACCTCGTTTTACAAGTTTGTCAATGTTGAATATGGTCAGAATGGAAAAGATAATAAATATAGTGGATTTTGCATTGACATTTTTGAGCAAGTACAAAAACTGCTGGGGTACGATCTTCCATATGAATATCATGCTATCAATGGAACATATAACGATTTGGTTCCACTCGTCTATAACAAGACTTTTGATGCTGTTATTGGAGACATGACCATAATAGAGGAAAGACTGAAGTATGTGGATTTTACAGTGCCATATGCAGAATCAGGATTGTCAATGATAGTTCCAATGAAGTCTGGAGATTCAGCATGGATGTTTATGAAACCATTTACCTGGGAATTGTGGCTGGTTACAGGTGCAATCTTGATTTACACAATGTTAGTTGTTTGGTATCTCGAGAGAGAACCCAACCCCGAGTTTCATGGAAACTTGAAGCTCCAGCTCAGCACAGCTTTTTGGTTTACTTTCTCCTCTCTGTTCTTTGCTCATAGGGAAAAAATGCACAGCAACTTAACTCGATTGGTGATGATCTCGTGGCTTTTTCTTGTATTGATTCTGACCTCATGCTACACAGCTAGTCTTTCTTCAATGCTCACAGTTAAGCAGTTGCGACCAAATGTCACGGACATTCAGTGGCTGAAGAACAACAACAAGAAAGTTGGTTGTGACGGCGACTCATTTGTTAGGACATTCCTAGAGAAAGTTGAAAAGTTCAAGCCAGAGAACATCATAAACATTACCAATGAATACAAGTATGATGAAGCCTTCGCTAACAACAGCATAGCAGCTGCTTTTCTTGAGCTCCCATATGAAAAAGTATTCATCAGTGAATACTGCAAGAGATACACCAGCTTCACCCCTAGAAATAGATTTGGAGGATTGGGCTTTATGTTCCAGAAAGGCTCTCCTCTAACCAGAGATTTTTCTAAAGCTATATTACATCTCTCAGAAAACGCAGAATTGAAGAGATTGGAAGAACAGTGGTTAATTACCTCACAGAATTGCTCCAACGTGACGTCCTCCAATGATACGGATAGTTTGAATCTTGGAAGCTTGTGGGTTCTATATGTCATCTCTGGTGCCACTTCCACTATTTGTGTGCTAATATCAGCCATCAGGTGTCTAATATCCAGGGAGACACATGAAGACGTTCCACTAGAAGGCAACGGAATACCAAATGATCAAAGGGTGTTGAAAGCGGTTATTACATTTGCAAAGCTGATTCATAACAAAAATCTTGATGCTTCAAACAAGGTACATGATGTAACTGACTCTTATTCGAGATCAGGTGATGCGAGCGTCACTGATACCCCTGAGCATTCACAGGAAATGGTTTCTCAACCAAAAGAAGTACACATAACAACACATGACAATGACATAGGAACCATGGAACCATATAGACCTCAAAATAATTGTCATATCAGACACACTAAAAACACACCTTAG 2844 0.3973 MHCLSTIPQTQARIWLFFFLLIPFVLIYGFQNETMNSDNKVISIGVIIDVNSRIGKEQEVAMDIAAQKYNNISKDYKLSLYFQNSTKDTLGAITLAEEMIKVQKVQVIIGMHTWPEAGIVAEIGRKTQVPIISFAAPTITPPLMKTRWPFLVRLANNGTAYIKCIADIVQAYSWKRVVVIYEDDGYGGNYGMLALLAEALQDVDSIIEHSLVLPPISSIHDPGELVSEEMIKLKQTQSRVFIVLQSSLEMTIHLFKEASKVGLVDKESVWIIPESITNLMDSINKSAISYMEGALGIKTYYSERSKDYQNFEFQFRRTFWLKNPEEDNRYPGFYALQAYDSINIVTQAITRMTSRNNSSPKSLLREIQSSNFVGLSGHIQLEAGQLMQKNLVLRIVNVAGKSYKELCFWTEQHGFTTIPHTGQGGNKVAGNTECFRGVRWPGNLDRDPKGWKMPTKQNPLKIAVRSRTSFYKFVNVEYGQNGKDNKYSGFCIDIFEQVQKLLGYDLPYEYHAINGTYNDLVPLVYNKTFDAVIGDMTIIEERLKYVDFTVPYAESGLSMIVPMKSGDSAWMFMKPFTWELWLVTGAILIYTMLVVWYLEREPNPEFHGNLKLQLSTAFWFTFSSLFFAHREKMHSNLTRLVMISWLFLVLILTSCYTASLSSMLTVKQLRPNVTDIQWLKNNNKKVGCDGDSFVRTFLEKVEKFKPENIINITNEYKYDEAFANNSIAAAFLELPYEKVFISEYCKRYTSFTPRNRFGGLGFMFQKGSPLTRDFSKAILHLSENAELKRLEEQWLITSQNCSNVTSSNDTDSLNLGSLWVLYVISGATSTICVLISAIRCLISRETHEDVPLEGNGIPNDQRVLKAVITFAKLIHNKNLDASNKVHDVTDSYSRSGDASVTDTPEHSQEMVSQPKEVHITTHDNDIGTMEPYRPQNNCHIRHTKNTP 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1828g00002 947 FunFam Glutamate receptor 569 699 - -
Vivi1828g00002 947 Gene3D - 728 803 - -
Vivi1828g00002 947 SUPERFAMILY Periplasmic binding protein-like I 39 451 IPR028082 -
Vivi1828g00002 947 CDD GluR_Plant 458 795 - -
Vivi1828g00002 947 FunFam Glutamate receptor 161 329 - -
Vivi1828g00002 947 Gene3D - 569 708 - -
Vivi1828g00002 947 Pfam Ligand-gated ion channel 796 826 IPR001320 GO:0015276|GO:0016020
Vivi1828g00002 947 MobiDBLite consensus disorder prediction 889 908 - -
Vivi1828g00002 947 MobiDBLite consensus disorder prediction 909 923 - -
Vivi1828g00002 947 MobiDBLite consensus disorder prediction 889 947 - -
Vivi1828g00002 947 Pfam Receptor family ligand binding region 59 391 IPR001828 -
Vivi1828g00002 947 Gene3D - 454 568 - -
Vivi1828g00002 947 SUPERFAMILY Periplasmic binding protein-like II 440 795 - -
Vivi1828g00002 947 PIRSF IGluLR_plant 9 933 IPR017103 -
Vivi1828g00002 947 CDD PBP1_GABAb_receptor_plant 43 416 IPR044440 -
Vivi1828g00002 947 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 872 IPR015683 -
Vivi1828g00002 947 Pfam Bacterial extracellular solute-binding proteins, family 3 482 795 IPR001638 -
Vivi1828g00002 947 Gene3D - 157 412 - -
Vivi1828g00002 947 Gene3D - 44 388 - -
Vivi1828g00002 947 FunFam Glutamate receptor 455 569 - -
Vivi1828g00002 947 SMART GluR_14 459 797 IPR001320 GO:0015276|GO:0016020
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1828g00002 8 910 Ion Channels AT2G29120 31.423 2.20e-150 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1828g00002 - - gmx:100818619 1355.89