Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1823g00002 ATGGCATCTAACACCAAAGATGAAGCCTCTTCATCTTCACCTTCCATCCTAACATCAAAATGGACTAACCATGTCTTCTTGAGTTTCAGAGGTGAAGACACTCGCCAAGGTTTCACTGGCCATCTTTTTGCTTCACTGGAAAGAAGAGGGATCAAAACATTCAAAGATGATCATGATCTTAAGAGAGGTGAAGTGATATCTGTAGAACTCAATAAAGCCATTGAAGAGTCTATGTTTGCTATCATCATTCTCTCACCAAACTATGCTTCCTCAACATGGTGTTTGGATGAGCTACAAAAGATTCTTGAATGCAACAAGAGTTTTGGTCAAGCTGTTTTTCCAATCTTCCACGGTGTAGATCCCTCTGATGTCAGGCATCAGCGAGGAAGCTTTACTAAAGCTTTTAGAAAACATGAAGAAAAATTCAGAAAAGATAGAAACAAAATTCAAAGGTGGAGAGATGCTTTAAGAGAAGTTGCTAGTTACTCTGGTTGGGACTCCAAGACCTGGCATGAGGCATCATTGGTGGAAACAATAGTTGACTATATTCAGGAAAATATCATTCCTACATTGCAGGTTTGCACAGATAATTTTGTTGGAATTGATTCACGAATAAAGGAAGTATATGCACTGCTAGAAATGAGGTTAAACGATGTTCGCTTCATAGGCATATGGGGCATGGGCGGCATAGGAAAGACAACTATTGCTAGATTAGTTTATGAAGAGATCAGAGAAAAATTCGAGGTTAGTTGCTTTCTTGCAGACATTAGAGAAACAGTTTCCAAGACAAGTGAAGTTCACTTTCAAATGGAACTTCTTTCTCATCTTAATATAAGAAGCAATGGTATTTATAATGTTCATGATGGCAAAAAGATATTAGCAAACTCCTTTAGCAACAAAAGGGTTCTCCTTGTTCTTGATGATGTAAGTGAATTAAGCCAACTGGAGAATTTAGCTGGAAAGCAAGAATGGTTTGGTCCAGGAAGTAGAGTAATAATCACAAGTAGAGATAAGCACTTGTTAATGACACATGGAGTGAAAGAAACTTATGAGGCTAAAGGCTTAGTAAAAAATGAAGCTCTTGAGCTCTTTTGTTTGAAAGCCTTTAAACAGAATCAACCTAAAGAAGAGTATTTGAGTTTGTGTGAAGAAGTGGTTGAATATACAAGAGGTCTTCCATTAGCACTTGATGTATTGGGTTCACATTTTCATGGAAGAACTGTTGAGGTTTGGCATAGTGCTTTAGAACAGATAAGAAATGTTCCTCACTTTAAAATCCATGATACATTGAAAATAAGCTATGACAGTTTACAATCTATGGAGAAAAAAATGTTTCTAGATATTGCTTGTTTCTTCAAAGGAATGGAGATAGATGAAGTAATAGAAATATTAGAAGATTGTGGTGACTATCCTAAAATTGGAATTGACATTCTGATTGAAAGATCTTTGGTAACTTCTGATAGGGGAGGCAAAAAGTTGTGGATGCATGATTTACTTGAAGAAATGGGAAGAAATATCGTGTTTCAAGAATCTCCGAATGATCCTGGAAAACGTAGTAGGTTATGGTCTCAAAAAGATATTGATCAAGTATTGACAAAAAATAAGGGAACTGATAAAATTCAAGGCATAGCTATGAACTTAGTTCAACCATATGAAGCAAGTTGGAACATTGAAGCCTTTTCCAAAATAAGTCAGCTAAGATTACTCAAATTATGTGGAATAAAACTTCCCCATGGCCTCAATTGCTTCCCTAGTTCACTAAAAGTTCTTGATTGGAGAGGATGTCCATTGGAAACCCTGCCACTTACTAATCATTTGGATGAAATTGTTGACCTCAAATTGCAGCATAGCAAAATAGAACAACTTTGGCATGGACCACAGTTTTTTGAAAATCTGAAGTCCATCAATTTGAGCTTTTCGGAGTCTCTAAAGAAATCGCCTGACGTTGTTGGTGTTCCAAATCTTGAGCTATTAGTCCTTGAAAGTTGTACAAACTTAACTGAGATTCATCCCTCCCTTTTAAGCCACAAGAAACTTATTCTATTGAATTTGAAAGACTGCAAAAGGCTCAAAGCGCTTCCATGCAAAATAGAGATAAGTTCCTTGAAGGTTTTATGTCTTTCCGGTTGCAGTGAATTTGAACATCTTCCTGAGTTTGAGGAAAACATGGAAAATCTAAATGTGCTTTCTTTAGACGAGACTTCTATAAAAGAACTACCATCTTCACTTGGATTTCTTGTATCCCTTTTTCTTCTGGATTTAGAAAATTGCAAGAATCTTGTCTCTCTTCCAGATACAATAGGTGAGTTGAAAACTCCCGCAATTCTGAATGTTATTGGCTGCACAGAACTCCGTAGTTTTCCAGAAGATTTTGCTGGTTTTGTAAGGGACGGAAGGATTTGGTTCTTGGGAAAATGA 2418 0.3672 MASNTKDEASSSSPSILTSKWTNHVFLSFRGEDTRQGFTGHLFASLERRGIKTFKDDHDLKRGEVISVELNKAIEESMFAIIILSPNYASSTWCLDELQKILECNKSFGQAVFPIFHGVDPSDVRHQRGSFTKAFRKHEEKFRKDRNKIQRWRDALREVASYSGWDSKTWHEASLVETIVDYIQENIIPTLQVCTDNFVGIDSRIKEVYALLEMRLNDVRFIGIWGMGGIGKTTIARLVYEEIREKFEVSCFLADIRETVSKTSEVHFQMELLSHLNIRSNGIYNVHDGKKILANSFSNKRVLLVLDDVSELSQLENLAGKQEWFGPGSRVIITSRDKHLLMTHGVKETYEAKGLVKNEALELFCLKAFKQNQPKEEYLSLCEEVVEYTRGLPLALDVLGSHFHGRTVEVWHSALEQIRNVPHFKIHDTLKISYDSLQSMEKKMFLDIACFFKGMEIDEVIEILEDCGDYPKIGIDILIERSLVTSDRGGKKLWMHDLLEEMGRNIVFQESPNDPGKRSRLWSQKDIDQVLTKNKGTDKIQGIAMNLVQPYEASWNIEAFSKISQLRLLKLCGIKLPHGLNCFPSSLKVLDWRGCPLETLPLTNHLDEIVDLKLQHSKIEQLWHGPQFFENLKSINLSFSESLKKSPDVVGVPNLELLVLESCTNLTEIHPSLLSHKKLILLNLKDCKRLKALPCKIEISSLKVLCLSGCSEFEHLPEFEENMENLNVLSLDETSIKELPSSLGFLVSLFLLDLENCKNLVSLPDTIGELKTPAILNVIGCTELRSFPEDFAGFVRDGRIWFLGK 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1823g00002 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 448 IPR027417 -
Vivi1823g00002 805 Gene3D - 189 349 IPR027417 -
Vivi1823g00002 805 Gene3D Ribonuclease Inhibitor 552 699 IPR032675 -
Vivi1823g00002 805 PRINTS Disease resistance protein signature 389 403 - -
Vivi1823g00002 805 PRINTS Disease resistance protein signature 697 713 - -
Vivi1823g00002 805 PRINTS Disease resistance protein signature 296 310 - -
Vivi1823g00002 805 PRINTS Disease resistance protein signature 221 236 - -
Vivi1823g00002 805 Gene3D - 354 444 IPR042197 -
Vivi1823g00002 805 SUPERFAMILY "Winged helix" DNA-binding domain 425 531 IPR036390 -
Vivi1823g00002 805 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 165 IPR035897 -
Vivi1823g00002 805 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 188 - -
Vivi1823g00002 805 ProSiteProfiles TIR domain profile. 21 187 IPR000157 GO:0007165
Vivi1823g00002 805 SMART till_3 22 162 IPR000157 GO:0007165
Vivi1823g00002 805 Pfam NB-ARC domain 211 440 IPR002182 GO:0043531
Vivi1823g00002 805 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 773 IPR044974 GO:0006952
Vivi1823g00002 805 Gene3D - 17 188 IPR035897 -
Vivi1823g00002 805 Pfam TIR domain 24 183 IPR000157 GO:0007165
Vivi1823g00002 805 SUPERFAMILY L domain-like 509 789 - -
Vivi1823g00002 805 Gene3D Ribonuclease Inhibitor 700 796 IPR032675 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1823g00002 14 789 WRKY Transcription Factor Family AT4G12020 32.368 3.31e-106 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1823g00002 - - psat:127074983 1508.81