Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi181g00024 ATGTCAATGGATATGATGGCAACAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAATGTTCCATATAGCAGTTTGTTAACCATAGTGACAGTAAGGTGTGGACATTGTGGTAATTTGTTATCAGTTAATATGATGGCAGCATCAATTCAACCATTTCCTCTTCCTCAGCTTCCTCAGAAACAGCACACAATCTATGAAGAACCAAGCATCAAAGAACTGGGATCATCATCTTCAAAATGCAACAAAATAGCATCATTTGAGGCAGTAGTAGAGCATGAACAATCTAGGATTCCTCCCATTCGACCTATAGAGAAAAGACATCGGGTTCCTTCTGCTTACAACCGGTTTATTAAGGAGGAAATTCAAAGGATTAAGGCCAGTAACCCAGATATTAGCCACAGGGAAGCTTTCAGCTCAGCAGCAAAAAATTGGGCACATTTCCCTCATATTCACTTTGGGAAGCAACAAGCAAAGTTGGACCTGGTTCATGCTGAAGAAACTCATGAAAAAACTAATGGATTCTACTGA 549 0.4007 MSMDMMATERVCYVHCNFCNTILAVNVPYSSLLTIVTVRCGHCGNLLSVNMMAASIQPFPLPQLPQKQHTIYEEPSIKELGSSSSKCNKIASFEAVVEHEQSRIPPIRPIEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGKQQAKLDLVHAEETHEKTNGFY 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi181g00024 182 CDD HMG-box_SF 115 151 - -
Vivi181g00024 182 PANTHER PROTEIN YABBY 6-RELATED 1 163 IPR006780 GO:0007275
Vivi181g00024 182 Pfam YABBY protein 7 160 IPR006780 GO:0007275
Vivi181g00024 182 SUPERFAMILY HMG-box 107 155 IPR036910 -
Vivi181g00024 182 Gene3D High mobility group box domain 111 177 IPR036910 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi181g00024 1 182 C2C2-YABBY Transcription Factor Family AT1G08465 56.771 2.29e-66 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vivi181g00024 YABBY 1.3e-68 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi181g00024 K25796 - gmx:100500026 279.641