Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi181g00023 ATGTCAATGGATATGATGGCAACAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAATGTTCCATATAGCAGTTTGTTAACCATAGTGACAGTAAGGTGTGGACATTGTGGTAATTTGTTATCAGTTAATATGATGGCAGCATCAATTCAACCATTTCCTCTTCCTCAGCTTCCTCAGTCACAGAAACAGCACACAATCTATGAAGAACCAAGCATCAAAGAACTGGGATCATCATCTTCAAAATGCAACAAAATAGCATCATTTGAGGCAGTAGTAGAGCATGAACAATCTAGGATTCCTCCCATTCGACCTATAGAGAAAAGACATCGGGTTCCTTCTGCTTACAACCGGTTTATTAAGGAGGAAATTCAAAGGATTAAGGCCAGTAACCCAGATATTAGCCACAGGGAAGCTTTCAGCTCAGCAGCAAAAAATTGGGCACATTTCCCTCATATTCACTTTGGGAAGCAACAAGCAAAGTTGGACCTGGTTCATGCTGAAGAAACTCATGAAAAAACTAATGGATTCTACTGA 555 0.4018 MSMDMMATERVCYVHCNFCNTILAVNVPYSSLLTIVTVRCGHCGNLLSVNMMAASIQPFPLPQLPQSQKQHTIYEEPSIKELGSSSSKCNKIASFEAVVEHEQSRIPPIRPIEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGKQQAKLDLVHAEETHEKTNGFY 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi181g00023 184 CDD HMG-box_SF 117 153 - -
Vivi181g00023 184 PANTHER PROTEIN YABBY 6-RELATED 1 165 IPR006780 GO:0007275
Vivi181g00023 184 Pfam YABBY protein 7 162 IPR006780 GO:0007275
Vivi181g00023 184 SUPERFAMILY HMG-box 109 157 IPR036910 -
Vivi181g00023 184 Gene3D High mobility group box domain 113 179 IPR036910 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi181g00023 1 184 C2C2-YABBY Transcription Factor Family AT1G08465 57.292 1.08e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vivi181g00023 YABBY 2.8e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi181g00023 K25796 - gmx:100500026 286.189