Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi180g00016 ATGAGACTCTCTTCAGCTGGTTTTAGTCCTCCACCACCCCAAGAAGGGGAAAAGAAAGTTTTAGATTCAGAACTTTGGCATGCATGTGCTGGCCCTCTTGTCTCTTTGCCAGCAATTGGAAGTAGAGTTGTGTACTTTCCACAAGGTCACAGTGAACAAGTGGCTGTGTCAACCAACAAGGAAGTGGATGCCCATATTCCAAACTATCCAAGCTTACCTCCTCAGCTTGTTTGTCAACTTCATAATTTGACTATGCATGCTGATGCGGAGACCGATGAAGTGTATGCGCAGATGACTCTGCAACCTCTGAATGCTCAAGAGCAAAAAGAGGCTTACCTTCCAGCTGAGTTGGGCACTCCGAGTAAACAGCCAACAAACTACTTCTGCAAGACCTTGACTGCTAGTGACACAAGCACTCATGGGGGATTCTCTGTGCCTCGCCGTGCGGCTGAAAAAGTGTTTCCTCCATTGGACTTTTCCCAACAGCCTCCTGCTCAGGAGTTAATAGCAAGGGATTTGCATGGCAATGAATGGAAATTCAGACATATATTCCGGGGGCAGCCGAAAAGGCATCTACTTACGACAGGATGGAGTGTTTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGAATGAAAAGAACCAACTGCTTCTTGGCATACGCCGTGCTAGCCGACCACAAACTGTGATGCCTTCATCGGTGTTGTCAAGTGATAGTATGCACTTGGGACTTCTCGCTGCAGCAGCGCATGCGGCTGCAACGAATAGTCGCTTCACTATTTTCTATAACCCACGTGCTTGCCCATCAGAATTTGTCATACCCTTAGCGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGATTCAGGATGCTGTTTGAAACAGAGGAGTCTAGTGTGCGACGGTACATGGGTACAATTACTGGCATCAGTGACTTGGATTCTGCCCGGTGGCCAAACTCACATTGGCGCTCGGTAAAGGTTGGATGGGATGAATCCACTGCCGGAGAAAGGCAACCGAGAGTATCTTTGTGGGAAATCGAACCATTAACAACATTTCCTATGTATCCATCTCCATTTCCCCTTAGGCTTAAACGACCATGGCCTTCTGGTTTGCCTTCATTCCATGGCATGAAAGATGACGATTTTGGCATGAATTCTCCTTTGTTGTGGCTTCGAGACAATGATAGAGGGCTTCAATCTCTTAATTTTCAAGGTATTGGGGTTAACCCTTGGATGCAGCCAAGATTTGACCCTTCCATGCTGAATATGCAAACTGATATGTATCAAACTGTGGCTGCTGCTGCGCTTCAAGACATGAGGAGTGTCGATCCTACCAAACAGCATCCTGGTTCCTTACTTCAATTTCAACAACCGCCAAACTTCCCGAACAGGACTGCTGCTTTAATGCAGGCACAGATGTTACAACAGTCACAATCTCAACAGGCTTTTCAAAATAATCAGGACAATCAGAATATATCGCAACCTCAGCAACAAACTCAGACTCATACTCATACACAACAGCATCTGCAGCACCAGCACTCATTCAATAATCGGCTCCATCATCAAAACCAGCAGCAGCAACAACAACAAACTCAACAGCAAGTGGTGGATAATCAGCATATTTCTGGTTCGATCTCTACAATGTCACAGTTTATGTCAGCGCCTCAACCGCAGTCACCACCACCTATGCAAGCTCTCCCTTCACTATGTCATCAACAGAGTTTTTCTGATTCAAATGTAAACTCTTCAACTACTATTGTTTCTCCTTTGCACAGTATCCTGGGTTCGTTTCCGCAGGATGAAACATCCCATCTTCTAAGTCTTCCTAGAACAAACTCTTGGGTTCCTGTCCAAAATTCAACCGGTTGGCCCTCGAAGCGTGTTGCGGTGGATCCACTCCTTTCTTCAGGAGCTTCTCAATGTAGTATGCCCCAGGTGGAACAGGTAGGGCAGCCGCAGAATAGCATATCTCAAAATGCTATTACGTTGCCACCGTTTCCTGGGAGGGAGTGCTCAATAGACCAGGAAGGGAACAATGATATGCAAAGTAATCTTTTATTTGGTGTCAATATCGATCCCTCGTCTCTTCTAATGCATAATAGGATTTCAAACTTTAAGGGGATTAATGGAAACATCAGTGACTCCTCAACCATGCCCTATCATCATCAATCTTCTAATTACATGAACACCGCAGACACCAATTCTTCATTGAATCATGGAGTAACGCCTAGTATTGGTGAATCTGGTTTCTTGCAAAACCTTGAAAATGGGGAGCAAGAAAACAACCCACTGAACAAGACCTTTGTGAAGGTTTATAAAGCAGGGTCCTTCGGAAGATCATTGGACATCACTAAGTTCAGCAGCTACCATGAGCTGCGTAGTGAGCTCGCCCGAATGTTTGGACTAGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCTTGGCCGGAATTTGTGAATAGTGTTTGGTGCATCAAGATACTTTCGCCCGAGGAAGTGCAGCAAATGGGCAACACTGGCCTCGGGCTTTTAAACTCGGTTCCCATTCAAAGGCTTTCAAATAGCATCTGCGATGACTATGTGAGCCGTCAAGATCAAAGAAATCTAAGCAGTGGAATAACAACCGTTGGATCTCTAGACTACTGA 2733 0.4563 MRLSSAGFSPPPPQEGEKKVLDSELWHACAGPLVSLPAIGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLVCQLHNLTMHADAETDEVYAQMTLQPLNAQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSGLPSFHGMKDDDFGMNSPLLWLRDNDRGLQSLNFQGIGVNPWMQPRFDPSMLNMQTDMYQTVAAAALQDMRSVDPTKQHPGSLLQFQQPPNFPNRTAALMQAQMLQQSQSQQAFQNNQDNQNISQPQQQTQTHTHTQQHLQHQHSFNNRLHHQNQQQQQQQTQQQVVDNQHISGSISTMSQFMSAPQPQSPPPMQALPSLCHQQSFSDSNVNSSTTIVSPLHSILGSFPQDETSHLLSLPRTNSWVPVQNSTGWPSKRVAVDPLLSSGASQCSMPQVEQVGQPQNSISQNAITLPPFPGRECSIDQEGNNDMQSNLLFGVNIDPSSLLMHNRISNFKGINGNISDSSTMPYHHQSSNYMNTADTNSSLNHGVTPSIGESGFLQNLENGEQENNPLNKTFVKVYKAGSFGRSLDITKFSSYHELRSELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQQMGNTGLGLLNSVPIQRLSNSICDDYVSRQDQRNLSSGITTVGSLDY 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi180g00016 910 Gene3D - 774 866 - -
Vivi180g00016 910 SMART B3_2 128 230 IPR003340 GO:0003677
Vivi180g00016 910 Pfam AUX/IAA family 769 862 IPR033389 -
Vivi180g00016 910 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 866 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi180g00016 910 FunFam Auxin response factor 126 230 - -
Vivi180g00016 910 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Vivi180g00016 910 MobiDBLite consensus disorder prediction 453 548 - -
Vivi180g00016 910 SUPERFAMILY CAD & PB1 domains 776 852 - -
Vivi180g00016 910 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Vivi180g00016 910 CDD B3_DNA 127 228 IPR003340 GO:0003677
Vivi180g00016 910 ProSiteProfiles PB1 domain profile. 777 861 IPR000270 GO:0005515
Vivi180g00016 910 Gene3D - 126 229 IPR015300 -
Vivi180g00016 910 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi180g00016 910 MobiDBLite consensus disorder prediction 458 548 - -
Vivi180g00016 910 Gene3D - 292 364 - -
Vivi180g00016 910 SUPERFAMILY DNA-binding pseudobarrel domain 113 257 IPR015300 -
Vivi180g00016 910 FunFam Auxin response factor 772 866 - -
Vivi180g00016 910 FunFam Auxin response factor 292 364 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi180g00016 1 484 B3 DNA Binding Superfamily AT1G30330 85.861 0.0 849
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi180g00016 AUX_IAA 3.1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi180g00016 - - gmx:100798719 1494.18