Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi180g00003 ATGGCAAGGTTTAGTTCATGTTACGGGAAGGAACTTTTTTTTGTTCTTCTTTTATTATCGTATTTGTCCTTTCAAGTTGCAACATGTGGCTCTATAGTAAAGTTTCTTCCTGGATTCAATGGTCCCCTTCCTTTTCTGCTTGAAACCGGGTATGTGGGAGTGGGAGAAGAAGAGGATGTGCAAGTGTTTTATTATTTCATTGAATCAGAGAATAATCCAAAGGAAGATCCTCTCATGCTTTGGCTAACTGGTGGACCTGGTTGCTCTGCTTTGTCTGGTCTTGTCTTTGAAATTGGTCCACTTGAATTTAAAAAGGAGGAATATAACGGGAGTTTGCCTAACCTGATATTGAAGCCACATTCATGGACAAAGGTAAGTAGCATTATATTCGTAGATTTACCTGTTTTCACAGGCTTTACATATGCCACAACAAATTCTGGTTCACAACGAAGTGACTCTATATTAGTTCATCAAACTCATCAATTTTTCAGAAAGTGGTTAGTTGATCATCCAAAATTCAAATCAAATGAAATTTACATTGGCGGTGATTCATACTCTGGCATCCCTATTCCAGGAATTGTTCAAGAAATTATACAAGAAAATGAAAAAGGTGTCCAACCTTGGATTAATCTTCAGGGATACTTGTTGGGAAATGCTGTAGCAACCAGAAAGGAAAGTAACTATAGAATTCCTTTTGCTCATGGAATGGGACTCATATCCGATGAACTATACGATTCACTCCAAATAAATTGTAAAGGCGATTATGTAAATGTAGAAAGCAGAAATATTTTATGTTCTAGAGATATTGAATTATTTGAAGAGGCTACATCAGGACTTAATTCAGCTCATATTTTAGACCCACAATGTGAGTGGCGTGATGATACTGAAAAAATTCTAAGGAGATCTCTAAGCAAGAAATATCCCTCCAACTTCCTCACTTCAAATCTCAGATTGCCTCCCTTAAATTGTCGAAGTTATCCATATTTCCTTTGCGCTGTTTGGGCCAATGATGAGAGTGTTCGCAATGCATTACACATACGTAAGGGTAGTATGGGAAAATGGCATCGTTGTACCTTTAATATACCTCATAAGAAGGATATATTAAACAGTTATGATTATCATGTAAATCTCAGTAGAAAAGGCATTCGTTCACTAATTTACAGTGGAGATCATGACTTGTTAGTTCCTTTCTTGGCGACACAAGCATGGATAAGATCTTTAAATTATTCCATCATTGATGATTGGAGACAGTGGTATACAAATGACCAAGTTGCAGGATACACACGGACTTACTCTAATATGATGACATTTGCAACTGTTAAGGGTGGAGGACACACAGCTCCAGAGTTTCAGCCTAAAGAATGCCTTGACATGTATAATAGATGGATATCTAATAAGGCTTTGTAG 1407 0.3703 MARFSSCYGKELFFVLLLLSYLSFQVATCGSIVKFLPGFNGPLPFLLETGYVGVGEEEDVQVFYYFIESENNPKEDPLMLWLTGGPGCSALSGLVFEIGPLEFKKEEYNGSLPNLILKPHSWTKVSSIIFVDLPVFTGFTYATTNSGSQRSDSILVHQTHQFFRKWLVDHPKFKSNEIYIGGDSYSGIPIPGIVQEIIQENEKGVQPWINLQGYLLGNAVATRKESNYRIPFAHGMGLISDELYDSLQINCKGDYVNVESRNILCSRDIELFEEATSGLNSAHILDPQCEWRDDTEKILRRSLSKKYPSNFLTSNLRLPPLNCRSYPYFLCAVWANDESVRNALHIRKGSMGKWHRCTFNIPHKKDILNSYDYHVNLSRKGIRSLIYSGDHDLLVPFLATQAWIRSLNYSIIDDWRQWYTNDQVAGYTRTYSNMMTFATVKGGGHTAPEFQPKECLDMYNRWISNKAL 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi180g00003 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Vivi180g00003 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Vivi180g00003 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 435 448 IPR001563 GO:0004185|GO:0006508
Vivi180g00003 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Vivi180g00003 468 Gene3D alpha/beta hydrolase 29 299 IPR029058 -
Vivi180g00003 468 FunFam Carboxypeptidase 370 465 - -
Vivi180g00003 468 Pfam Serine carboxypeptidase 37 465 IPR001563 GO:0004185|GO:0006508
Vivi180g00003 468 Gene3D - 324 467 - -
Vivi180g00003 468 FunFam Serine carboxypeptidase-like 11 27 468 - -
Vivi180g00003 468 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 452 IPR001563 GO:0004185|GO:0006508
Vivi180g00003 468 FunFam Carboxypeptidase 322 467 - -
Vivi180g00003 468 SUPERFAMILY alpha/beta-Hydrolases 33 466 IPR029058 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi180g00003 27 56 Calmodulin-binding Proteins AT2G22960 73.333 2.46e-08 52.0