LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi17g00155	ATGGGGGAAGAGATAAGAACAGACGAAGAGCGAGTATCGGAGTGGGAAAAGGGTCTACCCACCTTTCACGATCTCACTCCTCTCACCATGGCGTTAATCCCGCCGGAGCTAGCTTCCGCCTTCAGCATCTCCCCGGAGCCTCACCGCACACTCATCGACGTCAACCGCGCCTCCCGCAACACTCTCTCCATCCTCCGCGGCGGCGGCACAAGTCATCACCAAACGTTCTCATCCAACCACGACGAGCCTCTCGAAGAAGACGAAGAAATGGAAGAGGAAACCGATCGGGACGGCTCCGGTTCGGATTCGCGAAAGCACCGGAAGATCGATTCGGTTTCGGTTACGGAGGAAGCGGATTCGGCGGTTAGAACAGAGACGACGCTAAAACGGCCGCGTTTAGTGTGGACTCCGCAGCTTCACAAGAGATTCGTCGACGTTGTGGCGCATCTCGGGATAAAGAACGCGGTTCCGAAGACGATTATGCAGTTGATGAATGTGGAAGGGTTAACACGAGAGAATGTTGCTAGTCATTTGCAGAAGTATCGGCTTTATTTGAAGAGGATGCAAGGTCTTTCGAACGATGCTCCTTCTTCTTCTGATCATCTTTTTGCTTCTACTCCTGTTCCTCAGAGCTTGCATGAATCTGCTTCTGCTGTGAATTCTCATGCTCATTCTCACGCTCATTCGCATGCTCATTCTCATTCGCAATCGAATGGACATGGGAATTCGCAATCGCATCATTCCGTTACGATTTCTATGCCTTATCCGCCGCCTCCGCCGATGATGTCTATGCCTTTAATTGGTATGCCGCCGCATCCGCATGGTCATATGGGAATGGCTTTGCATCCTCCTTCTGGTTCTTCTTACCGATCACATCCGTTTAATATGATGCATCATAGGGATTGGCCTCCTCATCCTCACTCTCACTCTCACCCTCATATGTCTCCTAATGATAGTAATAAATAG	966	0.5072	MGEEIRTDEERVSEWEKGLPTFHDLTPLTMALIPPELASAFSISPEPHRTLIDVNRASRNTLSILRGGGTSHHQTFSSNHDEPLEEDEEMEEETDRDGSGSDSRKHRKIDSVSVTEEADSAVRTETTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDAPSSSDHLFASTPVPQSLHESASAVNSHAHSHAHSHAHSHSQSNGHGNSQSHHSVTISMPYPPPPPMMSMPLIGMPPHPHGHMGMALHPPSGSSYRSHPFNMMHHRDWPPHPHSHSHPHMSPNDSNK	321

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi17g00155	321	MobiDBLite	consensus disorder prediction	64	119	-	-
	Vivi17g00155	321	MobiDBLite	consensus disorder prediction	192	224	-	-
	Vivi17g00155	321	MobiDBLite	consensus disorder prediction	300	314	-	-
	Vivi17g00155	321	MobiDBLite	consensus disorder prediction	192	257	-	-
	Vivi17g00155	321	PANTHER	HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	8	285	IPR044841	GO:0003700\|GO:0006355
	Vivi17g00155	321	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	135	186	IPR017930	-
	Vivi17g00155	321	MobiDBLite	consensus disorder prediction	300	321	-	-
	Vivi17g00155	321	MobiDBLite	consensus disorder prediction	82	96	-	-
	Vivi17g00155	321	MobiDBLite	consensus disorder prediction	234	251	-	-
	Vivi17g00155	321	SUPERFAMILY	Homeodomain-like	127	187	IPR009057	-

Showing 1 to 10 of 15 entries

Previous1 2Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi17g00155	1	214	G2-like Transcription Factor Family	AT3G46640	60.251	6.69e-83	252

Showing 1 to 1 of 1 entries

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-G2-like	Vivi17g00155		Myb_DNA-binding	1.3e-08	CL0123

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi17g00155	-		-	vvo:131639158	489.96

Showing 1 to 1 of 1 entries