Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi17g00148 ATGAGTTTTGCTTTTCGAGGGAGTAGGGGAGATATCGAAAGTGGGTTTTCGGAATATGTTCCTGAAAGAACCTCAATGCGAGTTCATCCATCTCGGTCGGCTAACAGCAATTCCCTAGCTTTTCTTGTTACGGGTCTGAGAATGTATGCAACATGTCAACAACTTCAAGCGCAAGCCAGGGCTCATGCTGCAGCAGCCTCTGGGTTGCTTGGCCATGCTGAATTACATTTTCAAATGCCACCATCTATTTCAATTGCAACTCGAGGAAGATTGCAGGGACTTAGACTTCAGCTTGCACTTCTTGACCGAGAATTCGACGAGCTAGATTATGACACTTTGAGAGCTCTGGACTCTGATACTGCTTCTAGTACTCCTTCAATGACTGAGGAAGAGATAAATGCCTTGCCTGTTCACAAGTATAAAGTTCCACGCCCAACAAAAGATGGCTCCACCGGTTTAACATCCTCTTCAGAGGCAGCTGAGATTAAACAAGACTCCAAAGGAGCCGAGAGAAGTGTCAAAGGTTCAGAAGATGAGCTGATATGTACTGTATGTTTGGACCAAGTTAAGAAGGGGGAACTTGTGCGTAGCTTGCCGTGCTTGCATCAGTTTCATGCCAACTGCATCGATCCATGGCTTCGGCAGCAAGGAACATGTCCCGTGTGCAAATTTAGGATGGGGTCAGGAAGGCAGGGAAACACCGATAGCGAGTCTGGTGATTCAGATATTTTGTAA 735 0.4626 MSFAFRGSRGDIESGFSEYVPERTSMRVHPSRSANSNSLAFLVTGLRMYATCQQLQAQARAHAAAASGLLGHAELHFQMPPSISIATRGRLQGLRLQLALLDREFDELDYDTLRALDSDTASSTPSMTEEEINALPVHKYKVPRPTKDGSTGLTSSSEAAEIKQDSKGAERSVKGSEDELICTVCLDQVKKGELVRSLPCLHQFHANCIDPWLRQQGTCPVCKFRMGSGRQGNTDSESGDSDIL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi17g00148 244 MobiDBLite consensus disorder prediction 120 171 - -
Vivi17g00148 244 MobiDBLite consensus disorder prediction 148 162 - -
Vivi17g00148 244 SMART ring_2 182 222 IPR001841 -
Vivi17g00148 244 CDD RING-H2_PA-TM-RING 182 223 - -
Vivi17g00148 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 229 IPR013083 -
Vivi17g00148 244 ProSiteProfiles Zinc finger RING-type profile. 182 223 IPR001841 -
Vivi17g00148 244 PANTHER TARGET OF ERK KINASE MPK-1 1 229 - -
Vivi17g00148 244 Pfam Ring finger domain 182 223 IPR001841 -
Vivi17g00148 244 SUPERFAMILY RING/U-box 177 227 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi17g00148 1 244 C3H Transcription Factor Family AT3G55530 61.232 1.63e-100 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi17g00148 K16283 - gmx:100805406 348.206