Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi17g00133 ATGGATCGCAAGTTAACTTTGAAGAGGAAATTTGATTTCACTGAAGACGATGAATCAACCGTCGACGTTCTTCATGAAACCTCTAGCCTCGCCGACGATATTACTAAACGCGTAGATCGGATAAACTCGGTTTCTTTGTCGTCCGATCAAGATATCGGTGCTGCTCAAAATGATCTCTGTTTTCTTTCCGGATACGCTAAAGATGAGGACATTGTGGATCTTATGGTAGTTTGTGGTGTTGTTCCCACTATGGTGAAGGTTTTGGATATGGTGTCTAATAGAGGTGAATTAGATGCTAATACTTACGATGTGGAAAAAGATTGTGTCTCTATCCTTGGTCATCTTGCTGTCAAGCCGGAGAATCAGCAACTCATTGTTGATGCTGGAGCTTTGCCTTGTCTTGTGGAATTGTTGATGAGACCTAAAGCCCCTGGTGTTTCTCAAGCACTTTTTTCTCGTCTTCTTGGGAGAGTAGCTGATGCAATAACCAATCTTGCCCATGAAAATATCAACATCAAGACCCTTGTCAGGTTGGAAGGTGGCATCCCTCCTCTTGTTGATTTGCTTGAATCCAATGATAAAAAGGTACAGAGAGCTGCTGCAGGGGCTTTAAGAACTCTTGCATTTCAAAATGCTGAGAATAAAGACCAGATTGTTGAATGCGATGCATTGCCCACTCTTGTACTAATGCTTGGATCAGAGGATCCTGCAATACATTATGAGGCGGTTGGTGTGATTGGAAATCTTGTCCATTCTTCGCCTGAAATTAAGAAAGAAGTTCTTCTAGCCGAGGCTTTACAACCAGTTATTTGCCTGCTAAGTTCCCCCTGTTTGGAGACCCAAAGAGAAGCAGCTCTTTTAATCGGTCAATTTGCCACAACAGATTCAGATTGCAAGATTCACATTGCCCAAAGAGGTGCTATAAACCCTTTAATCAAAATGCTTAAGTCTCCAGATTTACAACTTAGGGAAATGTCAACTTTTGCACTTGGGAGGTTGGCACAGGACTCACACAATCAAGCTGGCATTGCTTACAATGGAGGTATAGAGCCCCTCCTTAATCTTCTTGCTACTAAGAACGCTTCTGTCCAACACAATGCAGCTTTTGCTCTTTATGCTCTTGCTGATAATGAGGACAATGTTCCTCTTATTATTAAAGCCGATGGTTTACAAAAACTGCAGGATGGACATTTCAGTGTTCTACCTACTCGAGAGTGTGTAGCAAAGATGTTAAAAAGATTGGAAGAGAAGATGGAAGGGCGAGTACTGAAGCAAATGTTGCATCTTATGCGATCTGGGGAAAAGGTTGTTCAAAAACGTGTAGCTCTTGCTCTAGCACATTTATGTTCTGCCGATGATCGTAAAACTATTTTCATTGACAATAATGGATTAGAATTGCTGTTGGAACATCTTGAATCTTCAAACAAAAAGCAGAAGCGTGAAGCCTCTGCAGCGCTTCACGCAATGGCTACCAAAGGAATAGGTGCCTCTATTGTTGATCTTGCGCCTACATCACCAACTTCCCAGGTTTACTTGGGTGAGCAATATGTAAACAATCCACTACTTTCTGATGTCACATTCTTAGTTGAAGGCAAAATCTTTTATGCTCATAAAGTTTGTTTAGTTTCATCTATTATATTTCGTGCAATGTTTGATGGGGGTTACAGGGAAAAGGAAGCCAAGGATATAGAGATTCCAAATATTAAATGGAATGTCTTTGAGTTGATGATGAGATTTATATACACTGGAACAGTAGAAGTTGATTTGGAAGTTGCCCCGGACCTCCTTAAAGCTGCAGATCAATATCTGCTCGACGGTCTTAAGCGTATTTGTGAATCTGTTATTTCTAAGGATATTTCTGTGGAAAATGTTTCTCTAATGTATGTGATGTCAGACACTTATAATGCTACAACGTTAAAATATTCATGCATACTCTTTATCTTGGAGCAATTTGATAACTTGAGCTCCAAACCATGGTATTGTCGCTTTATCCGTTGCATTAAGCCGGACATTTGGAACTTCTTCTGGACCTTACTTATCACTTCTAAACAAGCTGACTAG 2061 0.4056 MDRKLTLKRKFDFTEDDESTVDVLHETSSLADDITKRVDRINSVSLSSDQDIGAAQNDLCFLSGYAKDEDIVDLMVVCGVVPTMVKVLDMVSNRGELDANTYDVEKDCVSILGHLAVKPENQQLIVDAGALPCLVELLMRPKAPGVSQALFSRLLGRVADAITNLAHENINIKTLVRLEGGIPPLVDLLESNDKKVQRAAAGALRTLAFQNAENKDQIVECDALPTLVLMLGSEDPAIHYEAVGVIGNLVHSSPEIKKEVLLAEALQPVICLLSSPCLETQREAALLIGQFATTDSDCKIHIAQRGAINPLIKMLKSPDLQLREMSTFALGRLAQDSHNQAGIAYNGGIEPLLNLLATKNASVQHNAAFALYALADNEDNVPLIIKADGLQKLQDGHFSVLPTRECVAKMLKRLEEKMEGRVLKQMLHLMRSGEKVVQKRVALALAHLCSADDRKTIFIDNNGLELLLEHLESSNKKQKREASAALHAMATKGIGASIVDLAPTSPTSQVYLGEQYVNNPLLSDVTFLVEGKIFYAHKVCLVSSIIFRAMFDGGYREKEAKDIEIPNIKWNVFELMMRFIYTGTVEVDLEVAPDLLKAADQYLLDGLKRICESVISKDISVENVSLMYVMSDTYNATTLKYSCILFILEQFDNLSSKPWYCRFIRCIKPDIWNFFWTLLITSKQAD 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi17g00133 686 SMART arm_5 336 376 IPR000225 GO:0005515
Vivi17g00133 686 SMART arm_5 295 335 IPR000225 GO:0005515
Vivi17g00133 686 SMART arm_5 68 117 IPR000225 GO:0005515
Vivi17g00133 686 SMART arm_5 253 293 IPR000225 GO:0005515
Vivi17g00133 686 SMART arm_5 118 167 IPR000225 GO:0005515
Vivi17g00133 686 SMART arm_5 211 251 IPR000225 GO:0005515
Vivi17g00133 686 SMART arm_5 451 491 IPR000225 GO:0005515
Vivi17g00133 686 SMART arm_5 168 209 IPR000225 GO:0005515
Vivi17g00133 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 79 130 IPR000225 GO:0005515
Vivi17g00133 686 SMART BTB_4 523 619 IPR000210 GO:0005515
Vivi17g00133 686 Gene3D Potassium Channel Kv1.1; Chain A 514 657 IPR011333 -
Vivi17g00133 686 Pfam BTB/POZ domain 516 617 IPR000210 GO:0005515
Vivi17g00133 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 306 348 IPR000225 GO:0005515
Vivi17g00133 686 SUPERFAMILY ARM repeat 163 490 IPR016024 -
Vivi17g00133 686 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 682 IPR044282 -
Vivi17g00133 686 Coils Coil 461 481 - -
Vivi17g00133 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 347 389 IPR000225 GO:0005515
Vivi17g00133 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 180 215 IPR000225 GO:0005515
Vivi17g00133 686 SUPERFAMILY POZ domain 514 617 IPR011333 -
Vivi17g00133 686 Gene3D - 399 510 IPR011989 -
Vivi17g00133 686 Gene3D - 42 150 IPR011989 -
Vivi17g00133 686 Gene3D - 266 398 IPR011989 -
Vivi17g00133 686 ProSiteProfiles BTB domain profile. 523 589 IPR000210 GO:0005515
Vivi17g00133 686 Gene3D - 151 265 IPR011989 -
Vivi17g00133 686 Pfam Armadillo/beta-catenin-like repeat 211 250 IPR000225 GO:0005515
Vivi17g00133 686 Pfam Armadillo/beta-catenin-like repeat 179 208 IPR000225 GO:0005515
Vivi17g00133 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 180 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi17g00133 246 491 U-box Gene Family AT2G23140 27.237 6.47e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vivi17g00133 BTB 1.3e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi17g00133 - - vvo:131612489 1292.72