Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi17g00132 ATGGATCGCAAGTTAACTTTGAAGAGGAAATTTGATTTCACTGAAGACGATGAATCAACCGTCGACGTTCTTCATGAAACCTCTAGCCTCGCCGACGATATTACTAAACGCGTAGATCGGATAAACTCGGTTTCTTTGTCGTCCGATCAAGATATCGGTGCTGCTCAAAATGATCTCTGTTTTCTTTCCGGATACGCTAAAGATGAGGACATTGTGGATCTTATGGTAGTTTGTGGTGTTGTTCCCACTATGGTGAAGGTTTTGGATATGGTGTCTAATAGAGGTGAATTAGATGCTAATACTTACGATGTGGAAAAAGATTGTGTCTCTATCCTTGGTCATCTTGCTGTCAAGCCGGAGAATCAGCAACTCATTGTTGATGCTGGAGCTTTGCCTTGTCTTGTGGAATTGTTGATGAGACCTAAAGCCCCTGGTGTTTCTCAAGCACTTTTTTCTCGTCTTCTTGGGAGAGTAGCTGATGCAATAACCAATCTTGCCCATGAAAATATCAACATCAAGACCCTTGTCAGGTTGGAAGGTGGCATCCCTCCTCTTGTTGATTTGCTTGAATCCAATGATAAAAAGGTACAGAGAGCTGCTGCAGGGGCTTTAAGAACTCTTGCATTTCAAAATGCTGAGAATAAAGACCAGGTAGTTGATTTGGCACAACAACTTACTATGGTGGATTCTTTTGTAATAGTTGCTTACAAGAATATAAAATTGCAGATTGTTGAATGCGATGCATTGCCCACTCTTGTACTAATGCTTGGATCAGAGGATCCTGCAATACATTATGAGGCGGTTGGTGTGATTGGAAATCTTGTCCATTCTTCGCCTGAAATTAAGAAAGAAGTTCTTCTAGCCGAGGCTTTACAACCAGTTATTTGCCTGCTAAGTTCCCCCTGTTTGGAGACCCAAAGAGAAGCAGCTCTTTTAATCGGTCAATTTGCCACAACAGATTCAGATTGCAAGATTCACATTGCCCAAAGAGGTGCTATAAACCCTTTAATCAAAATGCTTAAGTCTCCAGATTTACAACTTAGGGAAATGTCAACTTTTGCACTTGGGAGGTTGGCACAGGACTCACACAATCAAGCTGGCATTGCTTACAATGGAGGTATAGAGCCCCTCCTTAATCTTCTTGCTACTAAGAACGCTTCTGTCCAACACAATGCAGCTTTTGCTCTTTATGCTCTTGCTGATAATGAGGACAATGTTCCTCTTATTATTAAAGCCGATGGTTTACAAAAACTGCAGGATGGACATTTCAGTGTTCTACCTACTCGAGAGTGTGTAGCAAAGATGTTAAAAAGATTGGAAGAGAAGATGGAAGGGCGAGTACTGAAGCAAATGTTGCATCTTATGCGATCTGGGGAAAAGGTTGTTCAAAAACGTGTAGCTCTTGCTCTAGCACATTTATGTTCTGCCGATGATCGTAAAACTATTTTCATTGACAATAATGGATTAGAATTGCTGTTGGAACATCTTGAATCTTCAAACAAAAAGCAGAAGCGTGAAGCCTCTGCAGCGCTTCACGCAATGGCTACCAAAGGAATAGGTGCCTCTATTGTTGATCTTGCGCCTACATCACCAACTTCCCAGGTTTACTTGGGTGAGCAATATGTAAACAATCCACTACTTTCTGATGTCACATTCTTAGTTGAAGGCAAAATCTTTTATGCTCATAAAGTTTGTTTAGTTTCATCTATTATATTTCGTGCAATGTTTGATGGGGGTTACAGGGAAAAGGAAGCCAAGGATATAGAGATTCCAAATATTAAATGGAATGTCTTTGAGTTGATGATGAGATTTATATACACTGGAACAGTAGAAGTTGATTTGGAAGTTGCCCCGGACCTCCTTAAAGCTGCAGATCAATATCTGCTCGACGGTCTTAAGCGTATTTGTGAATCTGTTATTTCTAAGGATATTTCTGTGGAAAATGTTTCTCTAATGTATGTGATGTCAGACACTTATAATGCTACAACGTTAAAATATTCATGCATACTCTTTATCTTGGAGCAATTTGATAACTTGAGCTCCAAACCATGGTATTGTCGCTTTATCCGTTGCATTAAGCCGGACATTTGGAACTTCTTCTGGACCTTACTTATCACTTCTAAACAAGCTGACTAG 2136 0.4026 MDRKLTLKRKFDFTEDDESTVDVLHETSSLADDITKRVDRINSVSLSSDQDIGAAQNDLCFLSGYAKDEDIVDLMVVCGVVPTMVKVLDMVSNRGELDANTYDVEKDCVSILGHLAVKPENQQLIVDAGALPCLVELLMRPKAPGVSQALFSRLLGRVADAITNLAHENINIKTLVRLEGGIPPLVDLLESNDKKVQRAAAGALRTLAFQNAENKDQVVDLAQQLTMVDSFVIVAYKNIKLQIVECDALPTLVLMLGSEDPAIHYEAVGVIGNLVHSSPEIKKEVLLAEALQPVICLLSSPCLETQREAALLIGQFATTDSDCKIHIAQRGAINPLIKMLKSPDLQLREMSTFALGRLAQDSHNQAGIAYNGGIEPLLNLLATKNASVQHNAAFALYALADNEDNVPLIIKADGLQKLQDGHFSVLPTRECVAKMLKRLEEKMEGRVLKQMLHLMRSGEKVVQKRVALALAHLCSADDRKTIFIDNNGLELLLEHLESSNKKQKREASAALHAMATKGIGASIVDLAPTSPTSQVYLGEQYVNNPLLSDVTFLVEGKIFYAHKVCLVSSIIFRAMFDGGYREKEAKDIEIPNIKWNVFELMMRFIYTGTVEVDLEVAPDLLKAADQYLLDGLKRICESVISKDISVENVSLMYVMSDTYNATTLKYSCILFILEQFDNLSSKPWYCRFIRCIKPDIWNFFWTLLITSKQAD 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi17g00132 711 SMART BTB_4 548 644 IPR000210 GO:0005515
Vivi17g00132 711 Pfam BTB/POZ domain 541 642 IPR000210 GO:0005515
Vivi17g00132 711 Gene3D - 150 225 IPR011989 -
Vivi17g00132 711 SUPERFAMILY POZ domain 539 642 IPR011333 -
Vivi17g00132 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 79 130 IPR000225 GO:0005515
Vivi17g00132 711 Gene3D Potassium Channel Kv1.1; Chain A 539 682 IPR011333 -
Vivi17g00132 711 Gene3D - 420 535 IPR011989 -
Vivi17g00132 711 Pfam Armadillo/beta-catenin-like repeat 240 275 IPR000225 GO:0005515
Vivi17g00132 711 Pfam Armadillo/beta-catenin-like repeat 179 208 IPR000225 GO:0005515
Vivi17g00132 711 Coils Coil 486 506 - -
Vivi17g00132 711 SMART arm_5 236 276 IPR000225 GO:0005515
Vivi17g00132 711 SMART arm_5 320 360 IPR000225 GO:0005515
Vivi17g00132 711 SMART arm_5 476 516 IPR000225 GO:0005515
Vivi17g00132 711 SMART arm_5 361 401 IPR000225 GO:0005515
Vivi17g00132 711 SMART arm_5 68 117 IPR000225 GO:0005515
Vivi17g00132 711 SMART arm_5 118 167 IPR000225 GO:0005515
Vivi17g00132 711 SMART arm_5 278 318 IPR000225 GO:0005515
Vivi17g00132 711 SMART arm_5 168 209 IPR000225 GO:0005515
Vivi17g00132 711 Gene3D - 42 149 IPR011989 -
Vivi17g00132 711 Gene3D - 233 419 IPR011989 -
Vivi17g00132 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 331 373 IPR000225 GO:0005515
Vivi17g00132 711 ProSiteProfiles BTB domain profile. 548 614 IPR000210 GO:0005515
Vivi17g00132 711 SUPERFAMILY ARM repeat 443 518 IPR016024 -
Vivi17g00132 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 372 414 IPR000225 GO:0005515
Vivi17g00132 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 180 215 IPR000225 GO:0005515
Vivi17g00132 711 SUPERFAMILY ARM repeat 70 420 IPR016024 -
Vivi17g00132 711 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 235 707 IPR044282 -
Vivi17g00132 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 180 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi17g00132 271 516 U-box Gene Family AT2G23140 27.237 9.86e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vivi17g00132 BTB 1.3e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi17g00132 - - vvo:131612489 1347.8