Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi17g00127 ATGGACCACAAGGAAACTTTGAAGAGGAAAATGGATTTCACCGAAGAAAATGAATCAGCCACCGATGTTGTTCACGAAAACTCTCGGCGTTTAACTCTCGCCGACGATATTAATCAACGCCTTGATCGGATTGACACAATTATTACACTGCCCGATCCAGATATTGCTTCTGCTCAAAATGATCTCCGTGTTCTTTCTGAATTCGCCAACGACGATGATAATGTGGATCTTATGGTAGTTTGTGGTGCTATTCCCACTGTGATCAAGGTTTTGCATATGGTGTCTAATGGAGGTGAATTTGATGCTGATACTTACGACGTGGAAAAAGACTGTGTCTCTATCCTTTGTCATCTCGCGGTCAAGCCTGAGTATCAAAGCCTCATTGTTAATACTGGAGCCGTGCCTTGTTTTGAGGAATTGTTGTTGAGACCTAAAGCCCCTGGTGTTTCTCAAGCAATTTATTCTGGTCTTCTTGGGACAGTAGCTGATGCAATAACCAATCTTGCCCATGAAAATATGGGCAACAAGAACCTTGTCAGGCATGAAGGTTGCATCCCTCCTCTTGTTGATTTGCTTGATTCCATTGATAGAAAGGCACAGAGAGCTGCTGCAGGGGCCTTGAGAACTCTTGCATTTCAAAATGCTGAGAATAAAGACCAGATTGTTGAATGCGATGCGTTGCCCACTCTTGTACTAATGCTTGGATCAGAGGATCCTGCAATACATTCTGAGGCGGTTGGTGTGATTGGAAATCTTGTCCATTCTTCGCCTGAAATTAAGAGAGAAGTTCTTCTAGAAGAGGCTTTACAACCAGTTATTTATCTACTAAGTTCCCCCTGTTTGGAGACCCAAAGAGAAGCAGCTCTTTTAATCGGTCAATTTGCCACAACGGATACAGATTGCACGATTCAAATTGCCCAAAGAGGTGCTATAAACCCTTTAATCAAAATGCTTAAGTCTCCAGATTTACAACTTAGGGAAATGTCAACTTTTGCACTTGGGAGGTTGGCACAGGACTCAGACAATCAAGCTGGCATTGCTTACAATGGAGGTATAGAGCCTCTCCTCAATCTTCTAGCTGCAAGGAATCCTTCTGTCCAACACAATGCAGCTTTTGCTCTTTATGCTCTTGCTGATAATGAGGACAATGTTCCTCTTATTATTAAAGCTGACGGTTTACGAAAACTGCAGGCTGGACATTTCACTGTGCTACCTACTCAAGAGTGTGTAGCTAGGATGTTAAAAAGATTGGAAGAGAAGATGGAAGGGCGAGTACTGAAGCAAATGTTATATCTTATGCGCTCCGGGAAAAGGGCTGTTCAGAAACGTGTAGTTCTTGCTCTTGCACAGTTATGTTCCGCCGATGATCGTAAAACTATTTTCATTGACAATAATGGATTAGAATTGCTGTTGTATTTTCTTGGATCTACAATCGAAAAGGAGAAGCGTGAAGCCTCTATAGCGCTTCACACAATGGCTACCAAAGGAATAAGTGGCTCTATTGTTGATCTTGTGCCTGTATCACCAACTCCCCGGATTTACTTGGATGAGCAATATGTAAACAATCCAGCGCTTTCTGATGTCACATTCATAGTTGAAGGCAAACGCTTTCATGCTCATAAAGCTTGTTTACTTTCATCTGATATATTTCGCGCAATGTTTGATGGTGGTTACAAGGAAATGAAAGCCAAGGATATAGAGATTCCAGATATTAAATGGAATGTCTTTGAGTTGATGATGAGATTTATATACGGCGGAACAGTAGATGTTGATTTGGATGTTGCCCCAGACCTCCTTAAAGCTGCAGATCAATATCTTCTCGACGGTCTTAAGCGTATTTGTGAATCTGTTATTTCTAAGGATATTTCTGTGGAAAATGTTTCAGTAATGTATGTGATGTCAGACACTTATAATGCTACATCGTTAAAATATTCATGCATACTCTTTATCTTGGAACAATTTGATAACTTGAGCTCCAAACCATGGTATTCTCACTTTATGCGTTGCATTAAGCCGGATATACGGAAATTCTTCTCGACTTTACTTACCATGACTAAACACACTGGCTAG 2070 0.4111 MDHKETLKRKMDFTEENESATDVVHENSRRLTLADDINQRLDRIDTIITLPDPDIASAQNDLRVLSEFANDDDNVDLMVVCGAIPTVIKVLHMVSNGGEFDADTYDVEKDCVSILCHLAVKPEYQSLIVNTGAVPCFEELLLRPKAPGVSQAIYSGLLGTVADAITNLAHENMGNKNLVRHEGCIPPLVDLLDSIDRKAQRAAAGALRTLAFQNAENKDQIVECDALPTLVLMLGSEDPAIHSEAVGVIGNLVHSSPEIKREVLLEEALQPVIYLLSSPCLETQREAALLIGQFATTDTDCTIQIAQRGAINPLIKMLKSPDLQLREMSTFALGRLAQDSDNQAGIAYNGGIEPLLNLLAARNPSVQHNAAFALYALADNEDNVPLIIKADGLRKLQAGHFTVLPTQECVARMLKRLEEKMEGRVLKQMLYLMRSGKRAVQKRVVLALAQLCSADDRKTIFIDNNGLELLLYFLGSTIEKEKREASIALHTMATKGISGSIVDLVPVSPTPRIYLDEQYVNNPALSDVTFIVEGKRFHAHKACLLSSDIFRAMFDGGYKEMKAKDIEIPDIKWNVFELMMRFIYGGTVDVDLDVAPDLLKAADQYLLDGLKRICESVISKDISVENVSVMYVMSDTYNATSLKYSCILFILEQFDNLSSKPWYSHFMRCIKPDIRKFFSTLLTMTKHTG 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi17g00127 689 SMART arm_5 339 379 IPR000225 GO:0005515
Vivi17g00127 689 SMART arm_5 298 338 IPR000225 GO:0005515
Vivi17g00127 689 SMART arm_5 454 494 IPR000225 GO:0005515
Vivi17g00127 689 SMART arm_5 71 120 IPR000225 GO:0005515
Vivi17g00127 689 SMART arm_5 121 170 IPR000225 GO:0005515
Vivi17g00127 689 SMART arm_5 214 254 IPR000225 GO:0005515
Vivi17g00127 689 SMART arm_5 172 212 IPR000225 GO:0005515
Vivi17g00127 689 SMART arm_5 256 296 IPR000225 GO:0005515
Vivi17g00127 689 ProSiteProfiles BTB domain profile. 526 592 IPR000210 GO:0005515
Vivi17g00127 689 Gene3D Potassium Channel Kv1.1; Chain A 517 660 IPR011333 -
Vivi17g00127 689 Pfam BTB/POZ domain 518 620 IPR000210 GO:0005515
Vivi17g00127 689 SMART BTB_4 526 622 IPR000210 GO:0005515
Vivi17g00127 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 350 392 IPR000225 GO:0005515
Vivi17g00127 689 Gene3D - 237 399 IPR011989 -
Vivi17g00127 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 183 218 IPR000225 GO:0005515
Vivi17g00127 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 309 351 IPR000225 GO:0005515
Vivi17g00127 689 SUPERFAMILY ARM repeat 161 495 IPR016024 -
Vivi17g00127 689 Gene3D - 402 510 IPR011989 -
Vivi17g00127 689 SUPERFAMILY POZ domain 517 620 IPR011333 -
Vivi17g00127 689 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 3 685 IPR044282 -
Vivi17g00127 689 Gene3D - 47 236 IPR011989 -
Vivi17g00127 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 225 252 IPR000225 GO:0005515
Vivi17g00127 689 Pfam Armadillo/beta-catenin-like repeat 214 253 IPR000225 GO:0005515
Vivi17g00127 689 Pfam Armadillo/beta-catenin-like repeat 174 211 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi17g00127 265 487 U-box Gene Family AT5G67340 26.923 1.50e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vivi17g00127 BTB 1.4e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi17g00127 - - vvo:131612489 1062.75