Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi17g00087 ATGAACTATCTGTATCCGGTGAAAGAGGAGTATTTGGAATTCGAAGCATCCTCGTCGACAACATCAATGGTGGGTGTTCCACGACCAATGGAGGGTCTTCATGAAGTTGGACCGCCACCATTTCTAACAAAAACTTTCGATGTTGTTGAGGATCCCACAACTAGTCACATAGTCTCATGGAACAGAGACGGTGTTAGCTTTGTTGTTTGGGATCCAAATGCTTTCTCCAGAGACCTTCTTCCTCGATACTTCAAACACAACAATTTCTCAAGTTTTGTTAGACAACTCAACACTTATGGATTTAGAAAAATCGATCCTGATAAATGGGAGTTTGCGAACGAAGGATTTCTGAGAGGACATAAGCATCTTTTAGCGAACATTAAGAGAAGGAGACAAACATCACAACCTAGTACTTCTTCATCTTCTTCTTCTCAACAATCATCATTTGGCCAATGTGTTGAAATTGGTCGTTATGGATTAGACGAAGAAATCGATCATTTGAAGCGCGATAAACAAGTGTTAATGATGGAGCTTGTGAAGCTGAGACAGCAACAGCAGAATACAAGGTCTTGTCTTCAAGCTATGGAGGAGAGGCTAAGAGGGACAGAAATTAAGCAGCAACAAATGATGGCCTTTTTGGCTAGAGCTATGAGAAATCCTGCTTTTATTCAGCAGTTGCTTCAACATAAGGAAAGGAGAAAGGTGATTGAAGAAGATGTTACTAAGAAGAGAAGAAGGCCTATTGAGTATGGCGAATCAAGCAATAGTGTTGAATTTGGGTTCGGGTTTGAAGTGTCCGAGTTGGAGGTTTTGGCTATGGAAATGCAAGGTCTTGGAAGAGGTGGAGGAGAACAAGAGCAAGAGGAAGAAGAGATTGAGGTATTTGAGACTAATGAGAATAATTTGAATAAAGAACTTGATGAAGGGTTTTGGGAAGAACTTTTTAGTGAAAAATTTGAGAGTGAGTTAGATATTTTATATGCTCAAAGAGATGATGAAGATAATGTCAATTTGCTGGCTAATCGCTTTGGTAACTTGGGTTCAAGTCCGAAATGA 1056 0.3987 MNYLYPVKEEYLEFEASSSTTSMVGVPRPMEGLHEVGPPPFLTKTFDVVEDPTTSHIVSWNRDGVSFVVWDPNAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFLRGHKHLLANIKRRRQTSQPSTSSSSSSQQSSFGQCVEIGRYGLDEEIDHLKRDKQVLMMELVKLRQQQQNTRSCLQAMEERLRGTEIKQQQMMAFLARAMRNPAFIQQLLQHKERRKVIEEDVTKKRRRPIEYGESSNSVEFGFGFEVSELEVLAMEMQGLGRGGGEQEQEEEEIEVFETNENNLNKELDEGFWEELFSEKFESELDILYAQRDDEDNVNLLANRFGNLGSSPK 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi17g00087 351 MobiDBLite consensus disorder prediction 130 149 - -
Vivi17g00087 351 Pfam HSF-type DNA-binding 41 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi17g00087 351 FunFam Heat shock transcription factor 1 34 131 - -
Vivi17g00087 351 Coils Coil 164 184 - -
Vivi17g00087 351 ProSitePatterns HSF-type DNA-binding domain signature. 80 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi17g00087 351 Gene3D - 34 131 IPR036388 -
Vivi17g00087 351 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 27 281 IPR027725 -
Vivi17g00087 351 SUPERFAMILY "Winged helix" DNA-binding domain 37 130 IPR036390 -
Vivi17g00087 351 Coils Coil 285 305 - -
Vivi17g00087 351 PRINTS Heat shock factor (HSF) domain signature 92 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi17g00087 351 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi17g00087 351 PRINTS Heat shock factor (HSF) domain signature 41 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi17g00087 351 SMART hsfneu3 37 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi17g00087 15 349 HSF AT3G22830 51.596 3.11e-122 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi17g00087 HSF_DNA-bind 5.4e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi17g00087 K09419 - gmx:100811798 464.151