Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi17g00086 ATGAACTATCTGTATCCGGTGAAAGAGGAGTATTTGGAATTCGAAGCATCCTCGTCGACAACATCAATGGTGGGTGTTCCACGACCAATGGAGGGTCTTCATGAAGTTGGACCGCCACCATTTCTAACAAAAACTTTCGATGTTGTTGAGGATCCCACAACTAGTCACATAGTCTCATGGAACAGAGACGGTGTTAGCTTTGTTGTTTGGGATCCAAATGCTTTCTCCAGAGACCTTCTTCCTCGATACTTCAAACACAACAATTTCTCAAGTTTTGTTAGACAACTCAACACTTATGGATTTAGAAAAATCGATCCTGATAAATGGGAGTTTGCGAACGAAGGATTTCTGAGAGGACATAAGCATCTTTTAGCGAACATTAAGAGAAGGAGACAAACATCACAACCTAGTACTTCTTCATCTTCTTCTTCTCAACAATCATCATTTGGCCAATGTGTTGAAATTGGTCGTTATGGATTAGACGAAGAAATCGATCATTTGAAGCGCGATAAACAAGTGTTAATGATGGAGCTTGTGAAGCTGAGACAGCAACAGCAGAATACAAGGTCTTGTCTTCAAGCTATGGAGGAGAGGCTAAGAGGGACAGAAATTAAGCAGCAACAAATGATGGCCTTTTTGGCTAGAGCTATGAGAAATCCTGCTTTTATTCAGCAGTTGCTTCAACATAAGGAAAGGAGAAAGGTGATTGAAGAAGATGTTACTAAGAAGAGAAGAAGGCCTATTGAGTATGGCGAATCAAGCAATAGTGTTGAATTTGGGTTCGGGTTTGAAGTGTCCGAGTTGGAGGTTTTGGCTATGGAAATGCAAGGTCTTGGAAGAGGTGGAGGAGAACAAGAGCAAGAGGAAGAAGAGATTGAGGTAGGTTTTGCAGAGCTGTTGAATGGACAAGAATCTCTGATAGTTGATAGAGATGATTATTTGCTCTCAAGATTGATTCAGAAGATGTAG 969 0.4097 MNYLYPVKEEYLEFEASSSTTSMVGVPRPMEGLHEVGPPPFLTKTFDVVEDPTTSHIVSWNRDGVSFVVWDPNAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFLRGHKHLLANIKRRRQTSQPSTSSSSSSQQSSFGQCVEIGRYGLDEEIDHLKRDKQVLMMELVKLRQQQQNTRSCLQAMEERLRGTEIKQQQMMAFLARAMRNPAFIQQLLQHKERRKVIEEDVTKKRRRPIEYGESSNSVEFGFGFEVSELEVLAMEMQGLGRGGGEQEQEEEEIEVGFAELLNGQESLIVDRDDYLLSRLIQKM 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi17g00086 322 MobiDBLite consensus disorder prediction 130 149 - -
Vivi17g00086 322 Gene3D - 34 131 IPR036388 -
Vivi17g00086 322 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi17g00086 322 PRINTS Heat shock factor (HSF) domain signature 41 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi17g00086 322 PRINTS Heat shock factor (HSF) domain signature 92 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi17g00086 322 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 27 256 IPR027725 -
Vivi17g00086 322 Pfam HSF-type DNA-binding 41 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi17g00086 322 Coils Coil 164 184 - -
Vivi17g00086 322 ProSitePatterns HSF-type DNA-binding domain signature. 80 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi17g00086 322 SUPERFAMILY "Winged helix" DNA-binding domain 37 130 IPR036390 -
Vivi17g00086 322 FunFam Heat shock transcription factor 1 34 131 - -
Vivi17g00086 322 SMART hsfneu3 37 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi17g00086 15 293 HSF AT3G22830 54.890 1.22e-115 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi17g00086 HSF_DNA-bind 4.6e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi17g00086 K09419 - gmx:100811798 407.527