Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi17g00083 ATGTCTAACAATCATAATCTACAATATGATGGTACCTCATTCATCATTGATATCACCAATACCTTCACAAAAGTCACTTCTCAATACACCAACAATGCAAAAAGAAGGTGGCGTTTTGCATATACAGCTATTTATTCTAGAAGGGTCATGCTTTCCCTTGCAAAAGAAGTTATATCCAGAAAAAATTCAAAACTCTTTCACACACAGTCTTCTAGCACCACTCTTGATGTAATTGAGCCACTGATTACTCGACGCTACGGAACCGATCATTACTCGTTGGTTTCTCATGATGTTGATAGGATCAAGCTTGCTGATATGGTTAAGGACAAAAACTTGAAGTCATTAGGTGAGTTTGGAGGAGTTGAAGGAGTTGGAAATGTTCTTGGAACGGTTCCGAATAAGGGGATTGTGGGAAGTGATGAAGATGTTTCGAGACGGATTGAGCTTTTTGGTTCGAATACTTACAAGAAGCCGCCCCCGAAAGGGCTTTTACATTTTGTGCTTGAAGCTTTCAATGATACAACTATTATTATTCTTCTGGTTTGTGCTGGTCTTTCCCTTGGTTTTGGCATTAAGGAGCATGGACCAGGGGAAGGTTGGTATGAAGGTGGAAGTATATTTCTAGCGGTTTTTCTTGTTGTGGTTGTAAGTGCATTGAGCAATTTCAGACAAGAGAGACAGTTTCATAAATTGTCTAAGATAAGTAACAATATTAAAGTGAAAGCTGTGAGAAACGGAAGGCCGCAGAATATATCGATTTTCGATGTTCTTGTGGGAGATATTGTGTCTCTCAAGATTGGTGATCAGATTCCGGCTGATGGAGTTTTTTTATCAGGTCATTCATTGCAGGTGGATGAGTCTAGCATGACAGGTGAGAGCGACCATGTAGAGATTGAGCCATTAAGAGCGCCTTTTTTGTTGTCCGGCGCGAAAGTGGTGGACGGATATGCTCAGATGCTTGTAACATCTGTTGGGAAAAACACGTCGTGGGGGCAAATGATGAGCTCGATATCGCGAGATACTAATGAGAGGACGCCGCTGCAAGCTCGCCTTGACAAGTTAACGTCTTCGATCGGGAAGGTTGGACTTGCGGTAGCGTTTCTTGTACTTCTAGTATTGTTGGTTCGTTATTTTACAGGTAATTCGCAAGAAAAGAAAGGGAATAAGAAGTTTCAAGGAAGTGACAGCGATGTAAACGATGTTTTGAATTCTGTTGTGAGTATTGTTGCGGCTGCGGTTACTATTGTGGTTGTGGCGATCCCTGAGGGTTTGCCGTTGGCCGTGACGCTCACGCTTGCTTACTCAATGAAAAGAATGATGGCAGATCATGCCATGGTGAGGAAACTTTCTGCTTGTGAAACTATGGGATCTGCAACAGTTATCTGTACTGATAAAACAGGTACATTGACATTGAACCAGATGAGGGTGACCAAGTTTTCTCTCGGCCTCGAAAATTTTATCGAAAATTTTTCCAATGCAATGGCTCCAAATGTTCTTGAGTTATTCCACCAAGGAGTGGGCCTTAATACAACCGGAAGCGTCTATAAGCCGCCATCAGGTTCTGAACCTGAAATTTCAGGTAGTCCAACGGAGAAAGCTATACTTATGTGGGCGGTATCGGATTTAGGTATGGACATGGATGAAATGAAACAGAAACATAAAGTCCTTCATGTTGAAACGTTTAACTCGGAGAAGAAACGAAGTGGCGTTGCAATAAGGAAGGACAGCGATAACCGAGTTCATGTACATTGGAAAGGAGCTGCAGAGATGATACTTGCAATGTGTACAAACTATATTGATAGTAACGGCGCGAGGAAGTCCCTCGAAAGAGAAGAACGGTATAAAATCGAGAAGATGATTCAAAGCATGGCTGCTAGTAGCCTAAGATGCATTGCTTTTGCTCATATGGAGATTTCAGATTCAGAAGATAAAGGTTATATGATCGAAAGCGAGAAAAAGACACTACGAGAAGATGGATTGACCTTGCTTGGCATTGTTGGTCTTAAGGATCCATGCAGACCAAACACAAAGAAAGCTGTGGAAACTTGCAAAGCTGCAGGAGTCGAAATTAAGATGATCACCGGCGATAACATATTCACTGCAAAGGCAATAGCAACAGAATGTGGAATATTAGATCCTAAGGATCATGCAAATGCTGGAGAAGTGGTGGAAGGTGTTGAATTCAGAAACTATACAGATGAAGAGAGAATGGAGAAAGTCGATAAGATCCGAGTAATGGCAAGATCGTCTCCGATGGACAAACTTCTGATGGTACAATGCCTGCGAAAGAAAGGCCATGTAGTTGCAGTCACAGGCGACGGTACAAACGATGCACCTGCATTAAAAGAAGCCGATATAGGACTCTCAATGGGAATCCAAGGAACCGAAGTCGCCAAAGAAAGCTCCGATATCGTTATCTTAGACGACAATTTCAATTCCGTCGCAACTGTTTTAAGATGGGGAAGATGCGTTTACAACAACATCCAGAAATTCATTCAGTTTCAACTAACTGTCAATGTCGCAGCACTCGTGATAAACTTTATCGCAGCAGTTTCTTCCGGCGATGTTCCCTTAACAACAGTTCAACTTCTTTGGGTGAATCTCATTATGGACACACTAGGTGCACTGGCACTAGCAACAGAAAGGCCTACAAAGGAGTTAATGAAGAAAAAACCGATCGGTAGAACCGAGCCTCTTATCACAAACATCATGTGGAGAAACCTTCTAGCGCAAGCTTCATATCAGATCGCGGTTCTTCTGATTATGCAGTTCTACGGAAAATCAATCTTCAACGTAAGTAAAGAGGTAAAGGATACACTAATTTTCAACACTTTTGTTCTCTGCCAAGTTTTCAACGAGTTCAACTCGAGAAGCATGGAGAAACTATACGTATTCGAAGGCATTCTGAGAAACCACCTGTTTCTCGGAATTGTGGGGGTAACTATTGTTCTTCAAATCCTGATGGTGGAACTGCTAAGAAAATTTGCTGATACAGAAAGATTAACATGGGAGCAATGGGGAATTTGTACCGGTATCGCAGTTGTTTCATGGCCTCTTGCTTGCATAGTAAAGCTCATACCTGTTTCAAATCAACATTCATTCAACTATACTAAGTGGGTTAAGTTATTAGTCTTCAAGATTAAGAAAGCTTTTTAG 3156 0.4167 MSNNHNLQYDGTSFIIDITNTFTKVTSQYTNNAKRRWRFAYTAIYSRRVMLSLAKEVISRKNSKLFHTQSSSTTLDVIEPLITRRYGTDHYSLVSHDVDRIKLADMVKDKNLKSLGEFGGVEGVGNVLGTVPNKGIVGSDEDVSRRIELFGSNTYKKPPPKGLLHFVLEAFNDTTIIILLVCAGLSLGFGIKEHGPGEGWYEGGSIFLAVFLVVVVSALSNFRQERQFHKLSKISNNIKVKAVRNGRPQNISIFDVLVGDIVSLKIGDQIPADGVFLSGHSLQVDESSMTGESDHVEIEPLRAPFLLSGAKVVDGYAQMLVTSVGKNTSWGQMMSSISRDTNERTPLQARLDKLTSSIGKVGLAVAFLVLLVLLVRYFTGNSQEKKGNKKFQGSDSDVNDVLNSVVSIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADHAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFSLGLENFIENFSNAMAPNVLELFHQGVGLNTTGSVYKPPSGSEPEISGSPTEKAILMWAVSDLGMDMDEMKQKHKVLHVETFNSEKKRSGVAIRKDSDNRVHVHWKGAAEMILAMCTNYIDSNGARKSLEREERYKIEKMIQSMAASSLRCIAFAHMEISDSEDKGYMIESEKKTLREDGLTLLGIVGLKDPCRPNTKKAVETCKAAGVEIKMITGDNIFTAKAIATECGILDPKDHANAGEVVEGVEFRNYTDEERMEKVDKIRVMARSSPMDKLLMVQCLRKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFNSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSSGDVPLTTVQLLWVNLIMDTLGALALATERPTKELMKKKPIGRTEPLITNIMWRNLLAQASYQIAVLLIMQFYGKSIFNVSKEVKDTLIFNTFVLCQVFNEFNSRSMEKLYVFEGILRNHLFLGIVGVTIVLQILMVELLRKFADTERLTWEQWGICTGIAVVSWPLACIVKLIPVSNQHSFNYTKWVKLLVFKIKKAF 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi17g00083 1051 NCBIfam calcium-translocating P-type ATPase, PMCA-type 110 1028 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vivi17g00083 1051 Pfam Cation transporting ATPase, C-terminus 856 1026 IPR006068 -
Vivi17g00083 1051 PRINTS P-type cation-transporting ATPase superfamily signature 686 696 - -
Vivi17g00083 1051 PRINTS P-type cation-transporting ATPase superfamily signature 771 790 - -
Vivi17g00083 1051 PRINTS P-type cation-transporting ATPase superfamily signature 285 299 - -
Vivi17g00083 1051 PRINTS P-type cation-transporting ATPase superfamily signature 462 476 - -
Vivi17g00083 1051 PRINTS P-type cation-transporting ATPase superfamily signature 664 675 - -
Vivi17g00083 1051 PRINTS P-type cation-transporting ATPase superfamily signature 795 807 - -
Vivi17g00083 1051 FunFam Calcium-transporting ATPase 214 338 - -
Vivi17g00083 1051 Pfam Cation transporter/ATPase, N-terminus 120 186 IPR004014 -
Vivi17g00083 1051 Gene3D - 139 338 - -
Vivi17g00083 1051 Gene3D - 472 671 IPR023299 GO:0000166
Vivi17g00083 1051 Gene3D - 459 816 IPR023214 -
Vivi17g00083 1051 FunFam Calcium-transporting ATPase 788 1030 - -
Vivi17g00083 1051 ProSitePatterns E1-E2 ATPases phosphorylation site. 464 470 IPR018303 -
Vivi17g00083 1051 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 469 668 IPR023299 GO:0000166
Vivi17g00083 1051 Pfam haloacid dehalogenase-like hydrolase 460 785 - -
Vivi17g00083 1051 CDD P-type_ATPase_Ca_PMCA-like 143 904 - -
Vivi17g00083 1051 FunFam Calcium-transporting ATPase 666 816 - -
Vivi17g00083 1051 Pfam E1-E2 ATPase 238 440 - -
Vivi17g00083 1051 SUPERFAMILY HAD-like 460 876 IPR036412 -
Vivi17g00083 1051 SUPERFAMILY Calcium ATPase, transmembrane domain M 119 1028 IPR023298 -
Vivi17g00083 1051 SFLD p-type atpase 444 824 IPR044492 -
Vivi17g00083 1051 SMART Cation_ATPase_N_a_2 117 191 IPR004014 -
Vivi17g00083 1051 PRINTS H+-transporting ATPase (proton pump) signature 803 828 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi17g00083 1051 PRINTS H+-transporting ATPase (proton pump) signature 648 666 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi17g00083 1051 PRINTS H+-transporting ATPase (proton pump) signature 771 787 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi17g00083 1051 SUPERFAMILY Calcium ATPase, transduction domain A 237 336 IPR008250 -
Vivi17g00083 1051 PANTHER CATION TRANSPORTING ATPASE 76 1029 - -
Vivi17g00083 1051 FunFam Calcium-transporting ATPase 472 671 - -
Vivi17g00083 1051 NCBIfam HAD-IC family P-type ATPase 206 378 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi17g00083 1051 NCBIfam HAD-IC family P-type ATPase 742 851 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi17g00083 1051 NCBIfam HAD-IC family P-type ATPase 404 484 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi17g00083 1051 SFLD Haloacid Dehalogenase 444 824 - -
Vivi17g00083 1051 Gene3D - 169 1025 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi17g00083 33 1038 Primary Pumps ATPases AT3G63380 70.080 0.0 1359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi17g00083 K01537 - gmx:100790034 1610.51