Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi17g00058 ATGGAAAGCTATATTGAAACAGATTTGATTGTTAATCACAAAGACACCGAGTTAAGGTTGGGATTACCGGGAAATGATGAACAAGATAAACATTCATGCAATATTGGATCGGTTGTTAGAAGCAACAAGAGGTCTTTTTCACGAGAAACAAGTGTTGAAGAGTCTTCCATCTGCAATGCTTCTAGTTCCTCAACTACAAGTGATCATGACCAAAGCAGTGTTCAACCTTCAAAGGTGCAAGTAGTTGGATGGCCACCAGTTAGATCGTTTAGGAAGAACAGTTTACAACAAAAGAAAATGGAAGATGGAAGTGGAATGTACGTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGAAAGATAGATCTTAATGTTTACAAAAGCTATTCAGAACTTCTCAAAGCTTTGGAAAATTTGTTCAAGTGCACATTTGGTGAGCATTCAGGTGAACATGCCCCTACTTATGAGGACAAGGATGGTGATTGGATGCTGGTTGGAGATGTTCCTTGGAACATGTTCTTATACTCATGCAAAAGGCTGAAGATAGTGAAAAGATCATAG 561 0.3922 MESYIETDLIVNHKDTELRLGLPGNDEQDKHSCNIGSVVRSNKRSFSRETSVEESSICNASSSSTTSDHDQSSVQPSKVQVVGWPPVRSFRKNSLQQKKMEDGSGMYVKVSMAGAPYLRKIDLNVYKSYSELLKALENLFKCTFGEHSGEHAPTYEDKDGDWMLVGDVPWNMFLYSCKRLKIVKRS 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi17g00058 186 Gene3D - 99 186 - -
Vivi17g00058 186 MobiDBLite consensus disorder prediction 57 78 - -
Vivi17g00058 186 SUPERFAMILY CAD & PB1 domains 98 182 - -
Vivi17g00058 186 Pfam AUX/IAA family 148 186 IPR033389 -
Vivi17g00058 186 Pfam AUX/IAA family 16 144 IPR033389 -
Vivi17g00058 186 ProSiteProfiles PB1 domain profile. 105 186 IPR000270 GO:0005515
Vivi17g00058 186 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 186 IPR003311 GO:0005634|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi17g00058 93 182 B3 DNA Binding Superfamily AT2G46530 38.542 2.72e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi17g00058 AUX_IAA 3.5e-30 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi17g00058 K14484 - gmx:100792134 234.958