Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi17g00055 ATGGAAAGCTATATTGAAACTGATTTGATTATTAATCACAAGGACACCGAGTTAAGGTTGGGATTACCGGGAAACGATGATGAACAAGATAAACATTCATGCAATATTGGATCGGTTGTTAGAAGCAACAAGAGATCTTTTTCACAGGAAACCAGTGCTGAAGAGTCTTCCATCTGCAATGCTTCTAGTTCCTCAACTACAAGTGATCATAACCAATGCACTGTTCAACCTTCAAAGGTGCAAGTAGTTGGATGGCCACCGATTAGATCGTTTAGGAAGAACAGTTTACAGCAAAAGAAAATGGAAGATGGAAGTGGAATGTACGTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGAAAGATAGATCTCAATGTTTACAAAAGCTATTCAGAACTTCTCATAGCTTTGGAAAATTTGTTCAAGTGCACATTTGGTGAGCATTCAGGTGAACATGCTCCTACTTATGAGGACAAGGATGGTGATTGGATGCTGGTTGGAGATGTTCCTTGGAACATGTTCATATCCTCTTGCAAGAGGTTGAAGATAGTGAAAGGATCAGAGGCAAAGGGGTTAGCATGTTTATGA 588 0.4014 MESYIETDLIINHKDTELRLGLPGNDDEQDKHSCNIGSVVRSNKRSFSQETSAEESSICNASSSSTTSDHNQCTVQPSKVQVVGWPPIRSFRKNSLQQKKMEDGSGMYVKVSMAGAPYLRKIDLNVYKSYSELLIALENLFKCTFGEHSGEHAPTYEDKDGDWMLVGDVPWNMFISSCKRLKIVKGSEAKGLACL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi17g00055 195 Pfam AUX/IAA family 149 193 IPR033389 -
Vivi17g00055 195 Pfam AUX/IAA family 16 145 IPR033389 -
Vivi17g00055 195 SUPERFAMILY CAD & PB1 domains 99 183 - -
Vivi17g00055 195 Gene3D - 100 195 - -
Vivi17g00055 195 ProSiteProfiles PB1 domain profile. 106 191 IPR000270 GO:0005515
Vivi17g00055 195 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 190 IPR003311 GO:0005634|GO:0006355
Vivi17g00055 195 MobiDBLite consensus disorder prediction 45 73 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi17g00055 94 192 B3 DNA Binding Superfamily AT2G46530 36.190 2.94e-13 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi17g00055 AUX_IAA 2.3e-30 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi17g00055 K14484 - gmx:100792134 263.462