Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi17g00053 ATGGAAAGCTATATTGAAACAGATTTGATTGTTAATCACAAGGACACAGAGTTAAGGTTGGGATTACCTGGAAACGATGATGAACAAGACAAACATTCATGCAATATTGGATCTGTTGTTAGAAGCAACAAGAGATCTTTTTCACCAGAAACAAGTGTTGAAGAGTCTTCCATTTGCAATGCTTCTAGTTCCTCAACCACAAGTGATCATGACCAATGCACTGTTCAACCTTCAAAGGTGCAAGTAGTTGGATGGCCACCAATTAGATCGTTTAGGAAGAACAGTTTACAACAAAAGAAAGTGGAAGATGGAAGTGGAACGTACGTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGAAAGATAGATCTCAATGTTTACAAAAGCTATTCAGAACTTCTCAAAGCTTTGGAAAATTTGTTCAAGTGCACAATTGGTGGATATTCAGAAAGAGAAGGGTATAATGGATCTGAGCATGCTCCTACTTATGAAGATAAGGATGGTGATTGGATGTTGGTTGGAGATGTTCCATGGAACATGTTCATATCCTCCTGCAAGAGGTTGAAGATAGTGAAAGGATCAGAGGCAAAGGGGTTGGCATGTTTATGA 609 0.3941 MESYIETDLIVNHKDTELRLGLPGNDDEQDKHSCNIGSVVRSNKRSFSPETSVEESSICNASSSSTTSDHDQCTVQPSKVQVVGWPPIRSFRKNSLQQKKVEDGSGTYVKVSMAGAPYLRKIDLNVYKSYSELLKALENLFKCTIGGYSEREGYNGSEHAPTYEDKDGDWMLVGDVPWNMFISSCKRLKIVKGSEAKGLACL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi17g00053 202 FunFam Auxin-responsive protein 101 202 - -
Vivi17g00053 202 Gene3D - 101 202 - -
Vivi17g00053 202 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 197 IPR003311 GO:0005634|GO:0006355
Vivi17g00053 202 SUPERFAMILY CAD & PB1 domains 100 190 - -
Vivi17g00053 202 MobiDBLite consensus disorder prediction 45 72 - -
Vivi17g00053 202 ProSiteProfiles PB1 domain profile. 106 198 IPR000270 GO:0005515
Vivi17g00053 202 Pfam AUX/IAA family 16 200 IPR033389 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi17g00053 94 199 B3 DNA Binding Superfamily AT2G46530 35.849 6.03e-14 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi17g00053 AUX_IAA 8.8e-57 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi17g00053 K14484 - gmx:100792134 289.656