LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi17g00026	ATGCACCTTCACTCCCTCCCTCTCCCGACGGATTCTCCAGCGCCGTCGTCCAAACCCTCATCCTCCAAAAACTCCCATTTCCGAGGCGTCCGGAAGCGTCCATGGGGCCGCTTCGCCGCCGAGATCCGTGATCCATGGAAAAAGACCCGCAAATGGCTAGGCACGTTCGACACAGCAGAAGAAGCCGCCAGAGCCTACGATGATGCTGCCAGAGCCCTCCGTGGACCCAAAGCCAAGACCAACTTCCCCTACTTCATAACTCCTACAATTCTTCCAATCCCTCCTCCAACCTTCGATGGTGGAAATGGGAGACATGTCGCGTTTTGGGGTCCTCCGGTTTGTTTCACGGCGGGTGCTCCGGTGAGGTCGGAGTACAAAGGTTACAAACTGGAGAATATTGTGGCGAGTAAGGGGAAGGAGGAGGAGGAGAAGAAGAAACCGTTTTTGTTTGACCTGAACTTGCCGGCACCGCTTGTTTGA	480	0.5542	MHLHSLPLPTDSPAPSSKPSSSKNSHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDDAARALRGPKAKTNFPYFITPTILPIPPPTFDGGNGRHVAFWGPPVCFTAGAPVRSEYKGYKLENIVASKGKEEEEKKKPFLFDLNLPAPLV	159

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi17g00026	159	CDD	AP2	26	84	IPR001471	GO:0003700\|GO:0006355
	Vivi17g00026	159	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	19	122	-	-
	Vivi17g00026	159	Pfam	AP2 domain	25	75	IPR001471	GO:0003700\|GO:0006355
	Vivi17g00026	159	SUPERFAMILY	DNA-binding domain	25	84	IPR016177	GO:0003677
	Vivi17g00026	159	PRINTS	Ethylene responsive element binding protein signature	49	65	IPR001471	GO:0003700\|GO:0006355
	Vivi17g00026	159	PRINTS	Ethylene responsive element binding protein signature	27	38	IPR001471	GO:0003700\|GO:0006355
	Vivi17g00026	159	FunFam	Ethylene-responsive transcription factor 2	25	84	-	-
	Vivi17g00026	159	SMART	rav1_2	26	89	IPR001471	GO:0003700\|GO:0006355
	Vivi17g00026	159	MobiDBLite	consensus disorder prediction	1	32	-	-
	Vivi17g00026	159	Gene3D	AP2/ERF domain	25	84	IPR036955	GO:0003700\|GO:0006355
	Vivi17g00026	159	ProSiteProfiles	AP2/ERF domain profile.	26	83	IPR001471	GO:0003700\|GO:0006355

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi17g00026	21	83	AP2-EREBP Transcription Factor Family	AT1G50640	85.714	1.73e-31	111

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Vivi17g00026		AP2	5.4e-14	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi17g00026	K09286		-	mnt:21389211	176.407