Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi17g00005 ATGTCACAATCTTCTTGGCCTATAGTTGCAATTGTTGTGCTAAGCATCTTGGCCATTGTTTTCATATTCATCAGTTACTTGATTCTTGTGACCAAATGTTACTCTAACTGGTGGCATCCATTGAGATGGATATCAATCTTACCACCTTCACAGAATGAAGAGCCCTTCATAGCGTTCTCTCCGAGGACATGGAACCGCGGTGTCGACGAATCCGTCATCCAAGAAATCCCAACGTTTCAGTTCACGAAAGGAGAAGGCGGCGATGATCGTCGAAGTGTCAAAGGTTGTGTGGTTTGTTTGAATTCTTTTCAAGAACAAGATATGTTGAAAGTACTTCCGAATTGCAGCCACCACTTTCACTTGGATTGCATAAACATCTGGCTTCAAACAAATGCTAATTGTCCTCTTTGTAGAACAAGCATTTCGGGTAACACGCAGTTTCCGACGAACCGTAACATAGCAGCACCGAGTTCTTCACCGCAGGATTCTCAGTTATTCTCTAACATGGGTAGTGATGAAGATTTTGTGGTGATTGAATTGTGGGGCGAAAGAGAGCATAGAGGAACAATGTCTCATATGCAGCAAGAAAGAAATGAGTCAAGGGAAATCATAGCATCAGTGAGTAGAACTCACTCTACAGCTAGAAACATGAAGGAGGAGAAGGTGGTGGAGCTGAAACCATGGAAATGTCACAGTGTTTCCATCATGGGTGATGAGTGTATTGATGTTAGAAAAAAAGATGAACAGTTCTCTATTCAGCCGATTAGACGATCTTTCTCATTGGATTCTGCAAGTGATAGAAAAGCTTACTTGGAAGTTCAAGACATCATTCGACAGAATAGTCGGCATCGTCAAAATGAAGATTGTGGCAGTGAAGATTGTAATAGTAGCAAGGGTAGAAGATCATTCTTTCCATTTCGTTATGGTAGGGGATCAAAAACTTCATCGCTTGCTAGAGAGAACAGAGTATAA 972 0.4156 MSQSSWPIVAIVVLSILAIVFIFISYLILVTKCYSNWWHPLRWISILPPSQNEEPFIAFSPRTWNRGVDESVIQEIPTFQFTKGEGGDDRRSVKGCVVCLNSFQEQDMLKVLPNCSHHFHLDCINIWLQTNANCPLCRTSISGNTQFPTNRNIAAPSSSPQDSQLFSNMGSDEDFVVIELWGEREHRGTMSHMQQERNESREIIASVSRTHSTARNMKEEKVVELKPWKCHSVSIMGDECIDVRKKDEQFSIQPIRRSFSLDSASDRKAYLEVQDIIRQNSRHRQNEDCGSEDCNSSKGRRSFFPFRYGRGSKTSSLARENRV 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi17g00005 323 SMART ring_2 96 137 IPR001841 -
Vivi17g00005 323 SUPERFAMILY RING/U-box 73 145 - -
Vivi17g00005 323 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Vivi17g00005 323 PANTHER RING-H2 FINGER PROTEIN ATL16 3 316 IPR044600 GO:0016567|GO:0016740
Vivi17g00005 323 Pfam Ring finger domain 96 138 IPR001841 -
Vivi17g00005 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 143 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi17g00005 2 283 C3H Transcription Factor Family AT1G04360 42.857 2.61e-67 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi17g00005 K19041 - psat:127126067 593.964