Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi179g00016 ATGCCATCTCAATATGTAATCAAACTTCCACTAGATCATGATGATAAACAACAACAATATTGTCGATTAGAGAAAGAAGATCCATTAGGTTTTCTCACAGAAGTAGGAGATATGTTTCAAGGTAAGAATAAGGGAAAGTATGATGAGTTTTTAGGAATTATGAAGGATTTCAAGGCTAACAGAATTGATACAAGTGTTGTTATGGAGAGAGTGAAGGAGCTGTTTAAAGGGCATATAACTTTGATTTTGGGGTTTTATGAGTTCTTGCCGGAGGAATACCATAGATTAGAGGAAGAACATGCCTTAGCTTTTGTCAAGAAAGTAGGAGATGTGTTTCAAGGTGAGAATAGGGAAAAATATGATGAGTTTTTAGAAATTTTTAAGGATTTCAAGGCTCGGAGAATCTATAAAATAAGAAAACAAGTGTACCTGGTTAAGACTCATTTGCCATTTGCTTAA 459 0.342 MPSQYVIKLPLDHDDKQQQYCRLEKEDPLGFLTEVGDMFQGKNKGKYDEFLGIMKDFKANRIDTSVVMERVKELFKGHITLILGFYEFLPEEYHRLEEEHALAFVKKVGDVFQGENREKYDEFLEIFKDFKARRIYKIRKQVYLVKTHLPFA 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi179g00016 152 Gene3D Paired amphipathic helix 27 90 IPR036600 GO:0006355
Vivi179g00016 152 Gene3D Paired amphipathic helix 91 148 IPR036600 GO:0006355
Vivi179g00016 152 SUPERFAMILY PAH2 domain 22 91 IPR036600 GO:0006355
Vivi179g00016 152 Pfam Paired amphipathic helix repeat 46 89 IPR003822 GO:0006355
Vivi179g00016 152 FunFam Paired amphipathic helix protein Sin3 27 90 - -
Vivi179g00016 152 SUPERFAMILY PAH2 domain 95 135 IPR036600 GO:0006355
Vivi179g00016 152 PANTHER SIN3B-RELATED 24 133 IPR039774 GO:0003714
Vivi179g00016 152 ProSiteProfiles PAH domain profile. 21 92 IPR003822 GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi179g00016 27 108 WRKY Transcription Factor Family AT4G12020 41.176 7.94e-13 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi179g00016 PAH 5.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi179g00016 K11644 - vvo:131625888 313.153