Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1797g00003 ATGGAGGCAAAAGCAGAGATTTACACTGTTCGATTCTACAAAATTATTACTACACCAAATGTTCAAGATGGAAAAATGAGGCTTCCAAAGGATTTCACAAAAAAATGTATTAGTGATATGCCAAATCCAATATTTCTCAAAACTCCGGATGATAAAAAATGGGAAATACATACCGCTAAAGTTGATGAAGATTTTTGGTTTGAGAAGGGCTGGAAAGAATTTGTTACATACTATTCACTAGAATATGGTAACATGATCATGTTTCACTATGAGGAAAATTCTCATTTTATGGTGAACATATTTGACAAGAGTACTCTTGAAATTGAATACCCTTTTCAAGACAATCAAAATGAACAAAACAACGTTGTCCTAATTAGTGATGACGATTCAGTTGAAAATTTGGACAAGTCACCTTCATTCAAAGAGAAAACCAATTCAAAATCATCAATTCCATGTCCTCAATCACTTAAGAAATTGAGAAGTTACAACAATGAAGGTGTTGGAACAAGCACCAAATTCCAAAACATATCAAAGTCTCCTTTGCAAACTAGTGGTGATAGAAGAGAATCCAAATTCTATAACTCTTCTAAGCATCATGACCAAGCTAGCGATGGTAATTCTAAATGTCAAAAAGAAAAGCAAGAGCAAAAGCAGGAGCAGGAGCAACAATCTGTTAAAACTAATGGAGCATTACGTAGAGCTAAAAAATTCAAATCCAAGAATCCATTTTTCACTGTTGTCATGAAATCTTCATATCTTCATACTCATTTTTTGTATGTCCCAACATGTTTCACAAAAAGTTATATGAAGAAACAGAAGAATGATATTCTTCTTCAGCTTATGGATGGGAGCACTTGGGATGCAAAATATTATTTTGGAAGAATTCAAGCTGGATGGAAGAAATTTTCAGCAGACAACAAGTTGAAAAAGGGTGATGTGTGTGTTTTTGAGTTGATCAATTGCAAAACTCTAACTTTCAAAGTATTAATATTTGGACATGAAAAAGACCTACATTCACATCTACCTCAAGAATTGGTTCAAAGAGAAAAGGATCGTGTAAGAGAGAAAAACACAAGCCGGTCAAAGATGTTTCAACCATTGATGGAGAAGACTGAGAAAACAAGAGAGAGTGTTGAATTAGATGTTCCAAACGCAAGACATGTGTTAATAGGATGTTATCATAAGATTCTTCATGAGCTCCAAAAGTTTCCGGAAGATCACGTGTATCGTAAAGCTGTTGAAACAATTACGAATCAAAAACTTATGGTGGTTTGTCAAGAAGAAGACTTGGAGATAATTAAGAGTCGTCTTGGTTGTGGTCAACTTGAAAAACTCATTGAAGAGGCTAAGGATGAACTCAAACTAATTGCCTATATGATTAAATAA 1386 0.3398 MEAKAEIYTVRFYKIITTPNVQDGKMRLPKDFTKKCISDMPNPIFLKTPDDKKWEIHTAKVDEDFWFEKGWKEFVTYYSLEYGNMIMFHYEENSHFMVNIFDKSTLEIEYPFQDNQNEQNNVVLISDDDSVENLDKSPSFKEKTNSKSSIPCPQSLKKLRSYNNEGVGTSTKFQNISKSPLQTSGDRRESKFYNSSKHHDQASDGNSKCQKEKQEQKQEQEQQSVKTNGALRRAKKFKSKNPFFTVVMKSSYLHTHFLYVPTCFTKSYMKKQKNDILLQLMDGSTWDAKYYFGRIQAGWKKFSADNKLKKGDVCVFELINCKTLTFKVLIFGHEKDLHSHLPQELVQREKDRVREKNTSRSKMFQPLMEKTEKTRESVELDVPNARHVLIGCYHKILHELQKFPEDHVYRKAVETITNQKLMVVCQEEDLEIIKSRLGCGQLEKLIEEAKDELKLIAYMIK 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1797g00003 461 SUPERFAMILY DNA-binding pseudobarrel domain 11 104 IPR015300 -
Vivi1797g00003 461 SUPERFAMILY DNA-binding pseudobarrel domain 237 332 IPR015300 -
Vivi1797g00003 461 Pfam B3 DNA binding domain 243 331 IPR003340 GO:0003677
Vivi1797g00003 461 Pfam B3 DNA binding domain 12 103 IPR003340 GO:0003677
Vivi1797g00003 461 PANTHER B3 DOMAIN-CONTAINING 8 322 - -
Vivi1797g00003 461 Gene3D - 223 335 IPR015300 -
Vivi1797g00003 461 MobiDBLite consensus disorder prediction 190 220 - -
Vivi1797g00003 461 CDD B3_DNA 243 331 IPR003340 GO:0003677
Vivi1797g00003 461 SMART B3_2 243 334 IPR003340 GO:0003677
Vivi1797g00003 461 SMART B3_2 12 104 IPR003340 GO:0003677
Vivi1797g00003 461 MobiDBLite consensus disorder prediction 143 189 - -
Vivi1797g00003 461 Pfam ETC complex I subunit conserved region 382 443 IPR006806 GO:0022904
Vivi1797g00003 461 ProSiteProfiles B3 DNA-binding domain profile. 243 334 IPR003340 GO:0003677
Vivi1797g00003 461 MobiDBLite consensus disorder prediction 134 231 - -
Vivi1797g00003 461 Gene3D - 4 105 IPR015300 -
Vivi1797g00003 461 CDD B3_DNA 11 102 IPR003340 GO:0003677
Vivi1797g00003 461 ProSiteProfiles B3 DNA-binding domain profile. 11 104 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1797g00003 12 331 B3 DNA Binding Superfamily AT3G18990 27.500 9.65e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi1797g00003 B3 2.7e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1797g00003 - - vvo:131642491 896.73