Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1797g00001 ATGGCAATTCAAAAACGTCCTGATTTTCATAGAGCTATAATGCAGAGTAAACAACTTAGACTTCCCAAGTTTTATGCAAAAAATTATTGGGATGGAACTCCTAATCCAATATTTCTCATACTTCCGAATGGTATTCAACAAAAAATATTTTGGGAAGAACGTGATGGTGATATTTGGTTTCAGAAAAATTGGGAAGAAATGAATTATTCTATCATAAGATGTGTAAATGAAGATAGGGAAAGTAAAGAGAGACCTAAAGAAACTGTTGAATTGAGTGATGAGAGTTTAAATGAGATTGAAGAACTTGCACAAACAAAAAGGAGCAAAAATAACAAAAGAAAAAGAAAAGTTGATTCAGATTTGAATACTACTCAACAAAAAATTTCAAATGAAGTTGCTGGAAGTGAAGAAGGAGTTATAGAAACTGATGAATTGAGCGATGAAAGTTTGGATGAGAGGGAGGAACTTAAACAAACTGGAAGGAGAAAAAATAACAGAAGAAAAAGAAAAGTCGATACCCAACCAAAATTTTCAGGTAGAATGAGAGAAAACCTGATTAAGGAAGGTAACAATAATAGTCCATATTTTGAAGTTACACTAAAACCATCCTATGCTAAAGGCTATATGTTGAGGATTCCAATAGCGTTTTCGAGAAAATATTTCAAAAAAAGTGCAAGAAAAGCAATGGTAAAGTTTGAGAATGACATGGCTATGGAAGTGATTATCGAGTATAATGATAACAATGGAGGATTTAGTATGAAACGTGGTTGGAAGAAATTTACTGAAAAATATAATTTGAAAATTGGTGATGTTTGTAAATTTGTGATGATTCAAGATCAACCACTTTCATTTTCTATTATCATTACTCGAATTAGAAAGGACAAGAAACATAAGAATTTTTTAGGTGTATCTTGTAGTGATAGTACAGTTATAAAGAAAAGTGTGGGAGAAACTTTTAAAGGAAGACCAAAAGGATCAACAAGTCGTAATGTGATGAACTCGTCATTTAAGCTTTTTGTGAATTGTCTAATTACTGTTCCGAATGAGCTTATGAATGGGGCAAAGAAAATTGTGAAGCTTAAAATGAAGGGAAAATCATGGTTGGTAAAAGTTAATTATTATCCGAGTATCAAGCGATCGAGATTAAGTGGAGGTTGGTCAAAGTTTAGGAAGGATTGTATGGTGGAGATAGGAGATACCTGTCTCTTTCAGTTAACTGATAACAAAAATATGGTGTTTGATGTTTCATTTGTAGGAAAGAAGACCTGA 1269 0.3231 MAIQKRPDFHRAIMQSKQLRLPKFYAKNYWDGTPNPIFLILPNGIQQKIFWEERDGDIWFQKNWEEMNYSIIRCVNEDRESKERPKETVELSDESLNEIEELAQTKRSKNNKRKRKVDSDLNTTQQKISNEVAGSEEGVIETDELSDESLDEREELKQTGRRKNNRRKRKVDTQPKFSGRMRENLIKEGNNNSPYFEVTLKPSYAKGYMLRIPIAFSRKYFKKSARKAMVKFENDMAMEVIIEYNDNNGGFSMKRGWKKFTEKYNLKIGDVCKFVMIQDQPLSFSIIITRIRKDKKHKNFLGVSCSDSTVIKKSVGETFKGRPKGSTSRNVMNSSFKLFVNCLITVPNELMNGAKKIVKLKMKGKSWLVKVNYYPSIKRSRLSGGWSKFRKDCMVEIGDTCLFQLTDNKNMVFDVSFVGKKT 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1797g00001 422 SMART B3_2 327 421 IPR003340 GO:0003677
Vivi1797g00001 422 SMART B3_2 196 290 IPR003340 GO:0003677
Vivi1797g00001 422 Pfam B3 DNA binding domain 196 283 IPR003340 GO:0003677
Vivi1797g00001 422 Pfam B3 DNA binding domain 345 412 IPR003340 GO:0003677
Vivi1797g00001 422 ProSiteProfiles B3 DNA-binding domain profile. 363 421 IPR003340 GO:0003677
Vivi1797g00001 422 SUPERFAMILY DNA-binding pseudobarrel domain 191 287 IPR015300 -
Vivi1797g00001 422 Coils Coil 92 112 - -
Vivi1797g00001 422 ProSiteProfiles B3 DNA-binding domain profile. 195 292 IPR003340 GO:0003677
Vivi1797g00001 422 PANTHER B3 DOMAIN-CONTAINING 173 413 - -
Vivi1797g00001 422 MobiDBLite consensus disorder prediction 129 176 - -
Vivi1797g00001 422 SUPERFAMILY DNA-binding pseudobarrel domain 350 414 IPR015300 -
Vivi1797g00001 422 CDD B3_DNA 194 290 IPR003340 GO:0003677
Vivi1797g00001 422 Gene3D - 180 293 IPR015300 -
Vivi1797g00001 422 Gene3D - 310 421 IPR015300 -
Vivi1797g00001 422 CDD B3_DNA 356 417 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1797g00001 193 411 REM Transcription Factor Family AT4G31650 25.896 1.08e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi1797g00001 B3 6.1e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1797g00001 - - vvo:131642494 668.307