Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1796g00004 ATGGTACGCATTGGTGAAAGTGTTTTCCATCATAGTCTCTCAGGTAAGGTTCCAATGGAGACGACAAAGAATATGAGTCGAAAATTTACCCCCATTAAGGATGTTAATGATTCAAAGGAAACTTGGAGATTGGCCGTTCGAGTTGTTGATGTATGGAGTGTTATCAACAACAAGGGTAAGGAGCATATGGAGATGGTTATAATGGGCGCATCGGGTGATAGGATACAAGTTTTGATTCGTTCTGACCATACACCGAAATGGAAAGAACGAATACGTGAAAACATGTCTTGCATAATCAACAATGGAACTGTTTATGATAACGATTTTCAGTGGAAGCTTTGTGATCATGACAAGAAGTTTGTGTTTATTGGTGGTACGACTGTGAAGGAAGTTGATATTCAGAACCTTCCTCCCAAAAGATTTTTTTTCAAAGACTTTTCTGATATTCTTGCAGGCAATTATGAGCTGAACCGACTTGAAGATATTATTGGTGTAGTTCAGGAAATCAACAATTTTCAATATAACAATTCTGGAAAAAAGTCATTTGTTTCATTGAGTCTTAAAGACTTGAAAGGTGTCACCGTTAACTGCACAATATGGGAGAGCTACGGAATAAATTTTTTGGATTTCTACCATGATGAAAAAAACAGTGGTGCTATTGTAACTGTACTAACTCATGCAATGATAAAGGAAACACAAGTCTCAAATGGATGGAGTGGATCTATATTGCTTATTAACGAAGACATTCCAGAGATAACTGAGTATTTATCAAAGTTACCTGCAAATGAGCAGACTGAAAAGCCTTCGCAGTCCTCAAAGGGTGCGTCTCTTTGGTCTAGTGCCTCTCAATTCACCCCAGTTAAAAGTTTCGTCCATAAGGCCAAACGTATATCTTTGAGTGACCTCTGCAAGGTGAAACAGGACATGTTATGTGTTACTGTTGGAACAACTCAAAAGTTTTTTGTCTCAAAACATGGTTGGTTTTATTATGGATGTACTAAATGTTCTTTAAAGGCATATGATGTGAACAATCCATACAAATGTTCATGTGGACAGAATGTAGAACATGCCATACCAAGGTATCGAGTTGACATATATGTAATTGATGGTGAATCAAAATTTCGCTTTGTGTTTTGGGACACTGACTGTGCCGACATTATTGGAAAGTCTGCTGATAGTATTTATAAAGCAATGCTTGAGAAAGTAGTTATCAAACCATTAACTGTTACAATCCAAATAGAAACTCTGAATAATAAATAA 1260 0.3667 MVRIGESVFHHSLSGKVPMETTKNMSRKFTPIKDVNDSKETWRLAVRVVDVWSVINNKGKEHMEMVIMGASGDRIQVLIRSDHTPKWKERIRENMSCIINNGTVYDNDFQWKLCDHDKKFVFIGGTTVKEVDIQNLPPKRFFFKDFSDILAGNYELNRLEDIIGVVQEINNFQYNNSGKKSFVSLSLKDLKGVTVNCTIWESYGINFLDFYHDEKNSGAIVTVLTHAMIKETQVSNGWSGSILLINEDIPEITEYLSKLPANEQTEKPSQSSKGASLWSSASQFTPVKSFVHKAKRISLSDLCKVKQDMLCVTVGTTQKFFVSKHGWFYYGCTKCSLKAYDVNNPYKCSCGQNVEHAIPRYRVDIYVIDGESKFRFVFWDTDCADIIGKSADSIYKAMLEKVVIKPLTVTIQIETLNNK 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1796g00004 419 SUPERFAMILY Nucleic acid-binding proteins 296 412 IPR012340 -
Vivi1796g00004 419 Gene3D - 284 419 IPR012340 -
Vivi1796g00004 419 CDD RPA1_DBD_A_like 43 128 - -
Vivi1796g00004 419 SUPERFAMILY Nucleic acid-binding proteins 28 131 IPR012340 -
Vivi1796g00004 419 Pfam Domain of unknown function DUF223 64 155 IPR003871 -
Vivi1796g00004 419 SUPERFAMILY Nucleic acid-binding proteins 142 265 IPR012340 -
Vivi1796g00004 419 Gene3D - 134 270 IPR012340 -
Vivi1796g00004 419 CDD RPA1_DBD_B_like 161 255 - -
Vivi1796g00004 419 Gene3D - 26 130 IPR012340 -
Vivi1796g00004 419 PANTHER OS03G0429900 PROTEIN 27 404 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1796g00004 28 254 Core DNA Replication Machinery Family AT5G45400 24.686 2.93e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1796g00004 - - vvo:131604714 642.499