Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1796g00003 ATGGGTTTTGAAAGTGGGAACATTTACTGTTCAATGCAAAATTCTTCTAGTTCTACCTTCTTCTCAACTCAAAGAAACATGGAAGGTCGGGGTGAGATCGGTCTTACCGGTGATGGTTTAGATACTAGTATGATTGGGAGAATGAGGGAAGATGAGTATGAAAGCCGGTCGGGAAGTGATAACTTTGAACTCGATGGAATGTCTGGTGATGAACAAGATGGTGGCGATGATCAGCGCAAGAGGAAGAAGAGATACCATAGACACACTCCTAATCAAATTCAAGAGCTTGAAAGTTTCTTCAAAGAGTGTCCTCATCCTGATGAAAAACAAAGGTTGGATCTTAGTAGGCGACTAGGCTTGGAAAATAAACAAGTTAAGTTCTGGTTTCAGAATCGCCGAACCCAAATGAAGACTCAACTGGAAAGACATGAAAACATAATGCTTAAGCAGGAAAATGACAAGCTAAGAGGGGAGAATAATATAATGAAAGATGCAATGGTAAATCCAATATGTAACAACTGCGGTGGGCCGGCGATTCCCGGTCAGATTTTGTTTGAAGAGCACCAGATTAGAATCGAAAATGCCCGTCTAAAGGATGAATTGAATCGTATATGTGCTTTAACAAACAAGTTTCTCGGCAAACCGATATCATCAATGGCTAATCCCATGGCTCTATCAGCCTCAAATTCGGGTCTGGAACTTGGTATTGGAAGGAATGGTTATGGTGGTGGTTCGAGCTCTCTTGGCCCGTCCTTACCAATGGGACTTGATCTCGGAGATTGTTCTGCAATGCCTGGTATTAGATCACCAATGGGAATGATGGGAAATAGTAATGACATTCAGCTTGAGAGATCGGTGCTTATAGATCTTGCATTAGCTGCTATGGATGAACTATTAAAGATGGCTCAGCCAGATAGTCCTATTTGGATTAAGGGTTTGGACGGAGAGAGGGACATATTGAATCAAGAAGAGTATGCAAGGTTTTCCTCTTGCATTGGTCCGAAACCTCCGGGTTTTGTTGCCGAAGCTACGAGAGAAACCGGCATAGTAATCATCAACAGTTCAGCCCTTATGGAAACTTTGATGGATGCGAATCGATACGCAGACATGTTTCAGTCTATGATAGCTAGATCCGTAAACCTTGATGTTTTATCTGGTGGCATTGGTGGAACCAGAAATGGTGCTATACATTTGATGCATGCTGAGGTTCAATTACTTTCACCATTAGTTCCGGTTCGCCCAGTGAGAATACTGCGCTTCTGTAAGCAACATGCAGAAGGTGTATGGGCTGTGGTTGATGTTTCTGTTGAGATGGGTCATGATGCTAATTCTCAACCATTTATTAGCTGTAGAAGACTTCCTTCAGGATGTATTGTGCAGGATATGCCAAATGGTTATTCCAAGGTAACTTGGATTGAGCATTGGGAGTATGATGAGAGTGTTGTTCATCAACTCTATCGTCCGTTGCTTATTTCCGGTATTGGATTCGGTGCTCATAGATGGATCGCCACTCTCCAAAGGCAGTGTGAAGGTTTGGCTATCCTTTTATCGTCGTCCATCTCAAGTGACGATCACACGGCACTGAGCCAAGCTGGTAGAAGAAGCATGCTGAAGCTGGCACAACGCATGACGAATAATTTTTGTTCAGGGGTTTGTGCTTCATCTGCGAGGAAGTGGGATAGCCTTCAAATGGGGACCTTGAGTGATGATATGAGAGTTATGACTAGGAAAAATGTTGATGACCCTGGTGAGCCTCCTGGTATTGTGCTCAGTGCAGCAACATCTGTTTGGATGCCTGTTTCAAGACAAAGAGTGTTTGATTTTCTACGTGATGAACGGCTTAGAAGCGAGTGGGACATCTTGTCAAACGGCGGACCAATGCAAGAAATGGTTCACATTGCCAAAGGTCAAGGACAGGGAAATTGCGTTTCTCTCCTACGTGCTAATGCTGTTAATGCGAATGATAGCAGCATGTTGATTCTGCAAGAGACATGGATGGATACATCGTGTTCGGTTGTGGTGTATGCACCGGTTGACGCACAATCATTGAACGTGGTAATGAGCGGTGGGGATTCTGCATATGTTGCACTCTTGCCTTCAGGCTTTGCCATTGTTCCTGATGGTAGTAATTCCTCTAGCTATGGTGCATCAAGTGAGACTTCACAGAAAGGCAACGGAGGCGACAATGGCGGAAGTTTGCTAACCGTCGGGTTCCAAATTCTGGTCAATAGTCTTCCAACCGCCAAGCTCACAATGGAATCAGTTGATACCGTGAATAATCTCATCTCGTGCACCATTCAGAAGATCAAAGCCGCGCTTAGAGTTGCATAA 2331 0.4402 MGFESGNIYCSMQNSSSSTFFSTQRNMEGRGEIGLTGDGLDTSMIGRMREDEYESRSGSDNFELDGMSGDEQDGGDDQRKRKKRYHRHTPNQIQELESFFKECPHPDEKQRLDLSRRLGLENKQVKFWFQNRRTQMKTQLERHENIMLKQENDKLRGENNIMKDAMVNPICNNCGGPAIPGQILFEEHQIRIENARLKDELNRICALTNKFLGKPISSMANPMALSASNSGLELGIGRNGYGGGSSSLGPSLPMGLDLGDCSAMPGIRSPMGMMGNSNDIQLERSVLIDLALAAMDELLKMAQPDSPIWIKGLDGERDILNQEEYARFSSCIGPKPPGFVAEATRETGIVIINSSALMETLMDANRYADMFQSMIARSVNLDVLSGGIGGTRNGAIHLMHAEVQLLSPLVPVRPVRILRFCKQHAEGVWAVVDVSVEMGHDANSQPFISCRRLPSGCIVQDMPNGYSKVTWIEHWEYDESVVHQLYRPLLISGIGFGAHRWIATLQRQCEGLAILLSSSISSDDHTALSQAGRRSMLKLAQRMTNNFCSGVCASSARKWDSLQMGTLSDDMRVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRVFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGQGNCVSLLRANAVNANDSSMLILQETWMDTSCSVVVYAPVDAQSLNVVMSGGDSAYVALLPSGFAIVPDGSNSSSYGASSETSQKGNGGDNGGSLLTVGFQILVNSLPTAKLTMESVDTVNNLISCTIQKIKAALRVA 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1796g00003 776 SUPERFAMILY Homeodomain-like 67 139 IPR009057 -
Vivi1796g00003 776 Coils Coil 133 153 - -
Vivi1796g00003 776 Gene3D - 69 154 - -
Vivi1796g00003 776 Pfam START domain 290 510 IPR002913 GO:0008289
Vivi1796g00003 776 FunFam Homeobox-leucine zipper protein HDG1 68 155 - -
Vivi1796g00003 776 SUPERFAMILY Bet v1-like 283 511 - -
Vivi1796g00003 776 SMART HOX_1 80 143 IPR001356 GO:0003677
Vivi1796g00003 776 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 78 773 IPR042160 -
Vivi1796g00003 776 MobiDBLite consensus disorder prediction 50 91 - -
Vivi1796g00003 776 SMART START_1 289 511 IPR002913 GO:0008289
Vivi1796g00003 776 SUPERFAMILY Bet v1-like 538 770 - -
Vivi1796g00003 776 ProSiteProfiles START domain profile. 280 514 IPR002913 GO:0008289
Vivi1796g00003 776 Pfam Homeodomain 82 137 IPR001356 GO:0003677
Vivi1796g00003 776 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981|GO:0006355
Vivi1796g00003 776 CDD START_ArGLABRA2_like 284 510 - -
Vivi1796g00003 776 CDD homeodomain 81 139 IPR001356 GO:0003677
Vivi1796g00003 776 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1796g00003 27 773 Homeobox Transcription Factor Family AT3G61150 60.395 0.0 903
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi1796g00003 START 2.9e-43 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1796g00003 K09338 - gmx:100785102 1227.62