Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1796g00002 ATGGAAGGTCGGGGTGAGATCGGTCTTACCGGTGATGGTTTAGATACTAGTATGATTGGGAGAATGAGGGAAGATGAGTATGAAAGCCGGTCGGGAAGTGATAACTTTGAACTCGATGGAATGTCTGGTGATGAACAAGATGGTGGCGATGATCAGCGCAAGAGGAAGAAGAGATACCATAGACACACTCCTAATCAAATTCAAGAGCTTGAAAGTTTCTTCAAAGAGTGTCCTCATCCTGATGAAAAACAAAGGTTGGATCTTAGTAGGCGACTAGGCTTGGAAAATAAACAAGTTAAGTTCTGGTTTCAGAATCGCCGAACCCAAATGAAGACTCAACTGGAAAGACATGAAAACATAATGCTTAAGCAGGAAAATGACAAGCTAAGAGGGGAGAATAATATAATGAAAGATGCAATGGTAAATCCAATATGTAACAACTGCGGTGGGCCGGCGATTCCCGGTCAGATTTTGTTTGAAGAGCACCAGATTAGAATCGAAAATGCCCGTCTAAAGGATGAATTGAATCGTATATGTGCTTTAACAAACAAGTTTCTCGGCAAACCGATATCATCAATGGCTAATCCCATGGCTCTATCAGCCTCAAATTCGGGTCTGGAACTTGGTATTGGAAGGAATGGTTATGGTGGTGGTTCGAGCTCTCTTGGCCCGTCCTTACCAATGGGACTTGATCTCGGAGATTGTTCTGCAATGCCTGGTATTAGATCACCAATGGGAATGATGGGAAATAGTAATGACATTCAGCTTGAGAGATCGGTGCTTATAGATCTTGCATTAGCTGCTATGGATGAACTATTAAAGATGGCTCAGCCAGATAGTCCTATTTGGATTAAGGGTTTGGACGGAGAGAGGGACATATTGAATCAAGAAGAGTATGCAAGGTTTTCCTCTTGCATTGGTCCGAAACCTCCGGGTTTTGTTGCCGAAGCTACGAGAGAAACCGGCATAGTAATCATCAACAGTTCAGCCCTTATGGAAACTTTGATGGATGCGAATCGATACGCAGACATGTTTCAGTCTATGATAGCTAGATCCGTAAACCTTGATGTTTTATCTGGTGGCATTGGTGGAACCAGAAATGGTGCTATACATTTGATGCATGCTGAGGTTCAATTACTTTCACCATTAGTTCCGGTTCGCCCAGTGAGAATACTGCGCTTCTGTAAGCAACATGCAGAAGGTGTATGGGCTGTGGTTGATGTTTCTGTTGAGATGGGTCATGATGCTAATTCTCAACCATTTATTAGCTGTAGAAGACTTCCTTCAGGATGTATTGTGCAGGATATGCCAAATGGTTATTCCAAGGTAACTTGGATTGAGCATTGGGAGTATGATGAGAGTGTTGTTCATCAACTCTATCGTCCGTTGCTTATTTCCGGTATTGGATTCGGTGCTCATAGATGGATCGCCACTCTCCAAAGGCAGTGTGAAGGTTTGGCTATCCTTTTATCGTCGTCCATCTCAAGTGACGATCACACGGCACTGAGCCAAGCTGGTAGAAGAAGCATGCTGAAGCTGGCACAACGCATGACGAATAATTTTTGTTCAGGGGTTTGTGCTTCATCTGCGAGGAAGTGGGATAGCCTTCAAATGGGGACCTTGAGTGATGATATGAGAGTTATGACTAGGAAAAATGTTGATGACCCTGGTGAGCCTCCTGGTATTGTGCTCAGTGCAGCAACATCTGTTTGGATGCCTGTTTCAAGACAAAGAGTGTTTGATTTTCTACGTGATGAACGGCTTAGAAGCGAGTGGGACATCTTGTCAAACGGCGGACCAATGCAAGAAATGGTTCACATTGCCAAAGGTCAAGGACAGGGAAATTGCGTTTCTCTCCTACGTGCTAATGCTGTTAATGCGAATGATAGCAGCATGTTGATTCTGCAAGAGACATGGATGGATACATCGTGTTCGGTTGTGGTGTATGCACCGGTTGACGCACAATCATTGAACGTGGTAATGAGCGGTGGGGATTCTGCATATGTTGCACTCTTGCCTTCAGGCTTTGCCATTGTTCCTGATGGTAGTAATTCCTCTAGCTATGGTGCATCAAGTGAGACTTCACAGAAAGGCAACGGAGGCGACAATGGCGGAAGTTTGCTAACCGTCGGGTTCCAAATTCTGGTCAATAGTCTTCCAACCGCCAAGCTCACAATGGAATCAGTTGATACCGTGAATAATCTCATCTCGTGCACCATTCAGAAGATCAAAGCCGCGCTTAGAGTTGCATAA 2253 0.4434 MEGRGEIGLTGDGLDTSMIGRMREDEYESRSGSDNFELDGMSGDEQDGGDDQRKRKKRYHRHTPNQIQELESFFKECPHPDEKQRLDLSRRLGLENKQVKFWFQNRRTQMKTQLERHENIMLKQENDKLRGENNIMKDAMVNPICNNCGGPAIPGQILFEEHQIRIENARLKDELNRICALTNKFLGKPISSMANPMALSASNSGLELGIGRNGYGGGSSSLGPSLPMGLDLGDCSAMPGIRSPMGMMGNSNDIQLERSVLIDLALAAMDELLKMAQPDSPIWIKGLDGERDILNQEEYARFSSCIGPKPPGFVAEATRETGIVIINSSALMETLMDANRYADMFQSMIARSVNLDVLSGGIGGTRNGAIHLMHAEVQLLSPLVPVRPVRILRFCKQHAEGVWAVVDVSVEMGHDANSQPFISCRRLPSGCIVQDMPNGYSKVTWIEHWEYDESVVHQLYRPLLISGIGFGAHRWIATLQRQCEGLAILLSSSISSDDHTALSQAGRRSMLKLAQRMTNNFCSGVCASSARKWDSLQMGTLSDDMRVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRVFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGQGNCVSLLRANAVNANDSSMLILQETWMDTSCSVVVYAPVDAQSLNVVMSGGDSAYVALLPSGFAIVPDGSNSSSYGASSETSQKGNGGDNGGSLLTVGFQILVNSLPTAKLTMESVDTVNNLISCTIQKIKAALRVA 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1796g00002 750 FunFam Homeobox-leucine zipper protein HDG1 42 129 - -
Vivi1796g00002 750 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Vivi1796g00002 750 SMART HOX_1 54 117 IPR001356 GO:0003677
Vivi1796g00002 750 Pfam START domain 264 484 IPR002913 GO:0008289
Vivi1796g00002 750 CDD START_ArGLABRA2_like 258 484 - -
Vivi1796g00002 750 Gene3D - 43 128 - -
Vivi1796g00002 750 MobiDBLite consensus disorder prediction 1 66 - -
Vivi1796g00002 750 SUPERFAMILY Bet v1-like 512 744 - -
Vivi1796g00002 750 SMART START_1 263 485 IPR002913 GO:0008289
Vivi1796g00002 750 ProSiteProfiles START domain profile. 254 488 IPR002913 GO:0008289
Vivi1796g00002 750 CDD homeodomain 55 113 IPR001356 GO:0003677
Vivi1796g00002 750 Coils Coil 107 127 - -
Vivi1796g00002 750 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Vivi1796g00002 750 Pfam Homeodomain 56 111 IPR001356 GO:0003677
Vivi1796g00002 750 SUPERFAMILY Bet v1-like 257 485 - -
Vivi1796g00002 750 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 52 747 IPR042160 -
Vivi1796g00002 750 SUPERFAMILY Homeodomain-like 41 113 IPR009057 -
Vivi1796g00002 750 MobiDBLite consensus disorder prediction 18 33 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1796g00002 1 747 Homeobox Transcription Factor Family AT3G61150 60.395 0.0 903
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi1796g00002 START 2.8e-43 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1796g00002 K09338 - gmx:100794400 1219.14