Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi177g00003 ATGGAGAAAAACTCTAGTTCATCAAGAATTGACAGAAAATTCATTGAGAGCAATAGAAGAAAAGAAATGAAGAATCTCCACCACAAACTCAATTCAATTCTTCCTCATCAAACTTCTAAGGAGGCTATTTCGAGGTCGGATCGGCTAGAGGAAGCAACAACTTACATAAAGAAGTTACAAATAAATTTGGAGAAAATGAAGGAAAAGAAGAAGCTTCTACTGGAAGAAATTCAAAGGCAAATGAAGTTGATGTTAAAATCTCCAAAAATTGAGATCCAACAAATAGGTTTAACTTTAGAGGTTGTTCTAATAACTGGATTGAATTCTCAGTTATTGTTCCATGAAACCATTAGAATTCTTAATGAAGAAGGAGTTGATATTGTTAATGCTAGCTATAAAGTCAATGAAGATTCTGTGTTCCATTCAATACATTGTCAGGTACAAGAAGAATTTGGCAATGAAACTGCAAGAGTATCTGAGAGATTGAACAAGTCTATGCATGATTATCAGCCTAATGCATGTCTTTGA 528 0.3352 MEKNSSSSRIDRKFIESNRRKEMKNLHHKLNSILPHQTSKEAISRSDRLEEATTYIKKLQINLEKMKEKKKLLLEEIQRQMKLMLKSPKIEIQQIGLTLEVVLITGLNSQLLFHETIRILNEEGVDIVNASYKVNEDSVFHSIHCQVQEEFGNETARVSERLNKSMHDYQPNACL 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi177g00003 175 Gene3D - 1 87 IPR036638 GO:0046983
Vivi177g00003 175 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 79 IPR036638 GO:0046983
Vivi177g00003 175 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
Vivi177g00003 175 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 165 - -
Vivi177g00003 175 Pfam Helix-loop-helix DNA-binding domain 12 60 IPR011598 GO:0046983
Vivi177g00003 175 Coils Coil 49 83 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi177g00003 4 164 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.449 8.30e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi177g00003 HLH 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi177g00003 - - gmx:100784418 207.223