Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1772g00002 ATGTCAGCATCCGATAATCGTCTAGAGAAGTTCACCGGCTTGACTCTTGACGATGTATTAGCCAAAAGGAGATTAGACATTCCGGTAGCACCTAACCAACCACCTCCATCCAAGAGTCGGACCCTATTCGACATTATCAGAGACGACGATACCAACAGAAAAGACCGTAGATCTTGGAAAGCCTTCAAGGACAAGCTTCGACTCAAGCGCGCTGGCTCTGCTTGGACATCATCAATTCATATTCCAACTTCAGATATCCCTGTTCAAAATCCAAACAGTAGAAGTTTTTCTCAATTAGGACGTCGTGACTCGGTTCGAATACAAAGTCACTACGACTCAGACATGTCAACCCAACCCATGACTCACCAAGTGGACGACCTCGATCCATCAAAGGGCAACAATGCTCCGGCCACTAAACCTCAGTTCAGTCGCCGTAGCTCCACCCGTTTCTCAGCTGACTCCCCGGAAAATTCTCCTGGTCGGGGAAATCTCCACCCACAACTCTCACGGCGAAATTCCACCAATGTGTCATCGTCGTCAGAGCAGTTTCACCGAGGACGTGTGGTGACTTTTCGGGACAGCTTCGATGAGGATGAGCCTGATGACGACAACAAGAATCAAGAAGCAGGGAGGACACTTTCAGCGAGGGAGGCAGTGGCAGCACAGGAGGCGGCAGAAGCAGCAGCAGCGGCAGGTGCTGAGGCTTCAGGAGGGCATCCAATGATGTCACTAATGGACTTACTGGAGGAGACTGATAGAGAGATGGGATTGGAAGGGGCGAGGTATGTATTGAGTGATGATGAAGACTATGATGATGATGATGATGACGATGATGATGAAGATGATGATCATAGAGGAGGTGCTATGGAAGGCACTTGTTGTGTTTGCATGGTGAAGCACAAGGGTGCTGCTTTCGCACCTTGTGGCCACAGTTTCTGCAGGATGTGTTCAAGGGAGCTTATGGTGGCTAAGGGAAATTGTCCACTCTGCAATAATTTCATTTCAGAGATTCTTGAGATATTCTGA 1026 0.4873 MSASDNRLEKFTGLTLDDVLAKRRLDIPVAPNQPPPSKSRTLFDIIRDDDTNRKDRRSWKAFKDKLRLKRAGSAWTSSIHIPTSDIPVQNPNSRSFSQLGRRDSVRIQSHYDSDMSTQPMTHQVDDLDPSKGNNAPATKPQFSRRSSTRFSADSPENSPGRGNLHPQLSRRNSTNVSSSSEQFHRGRVVTFRDSFDEDEPDDDNKNQEAGRTLSAREAVAAQEAAEAAAAAGAEASGGHPMMSLMDLLEETDREMGLEGARYVLSDDEDYDDDDDDDDDEDDDHRGGAMEGTCCVCMVKHKGAAFAPCGHSFCRMCSRELMVAKGNCPLCNNFISEILEIF 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1772g00002 341 SUPERFAMILY RING/U-box 292 337 - -
Vivi1772g00002 341 Pfam Zinc finger, C3HC4 type (RING finger) 291 336 - -
Vivi1772g00002 341 SMART ring_2 293 330 IPR001841 -
Vivi1772g00002 341 MobiDBLite consensus disorder prediction 81 185 - -
Vivi1772g00002 341 PANTHER OS01G0917900 PROTEIN 11 341 - -
Vivi1772g00002 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 341 IPR013083 -
Vivi1772g00002 341 ProSiteProfiles Zinc finger RING-type profile. 293 331 IPR001841 -
Vivi1772g00002 341 MobiDBLite consensus disorder prediction 81 220 - -
Vivi1772g00002 341 MobiDBLite consensus disorder prediction 265 284 - -
Vivi1772g00002 341 MobiDBLite consensus disorder prediction 262 284 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1772g00002 1 341 C3H Transcription Factor Family AT3G07120 37.666 1.92e-61 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1772g00002 - - gmx:100795449 369.777