Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1766g00005 ATGGAGAAAAAGATTGCAGTTAAATATAAAGAGTGTCTCAAGAACCATGCTGCTGCAATTGGTGGCAATGCAACTGATGGATGTGGTGAGTTCATGGCTAGTGGAGACGATGACTCACTTGAAGCTCTTAACTGTTGTGCTTGCAATTGCCACAGAAACTTCCACAGAAAAGAGTCTGATTCTCAGCATTATGCTCTTTCATTGATTCCTGATCATAACATTAATCCACCCTTCTTGGCTCATTTATCTCCAATCAAAAGTGAATCAAATAGTCCTTCTCATCAGTCTTACTATGAGAAAGATTGTATAAAGGAGGTGGAAAATCGAACCGAAAAGATGATAAAGAAGAGGTCCAGAACCAAGTTTAGTAAAGAACAGAAGGAGAAGATGTTGTGTTTTGCAGAAAAAGCTGAATGGAAGATACAGAAGCTAGAAGAATCTGTGGTTCAGAAGTTTTGTCAAGAGATTGGAATCAAGAGAAGGATACTCAAAGTGTGGATGCACAATAATAAGAACACTTTTTCCAAAAGAAATGTTTGTAGTATTAGTCGCAAATTTTAG 561 0.3743 MEKKIAVKYKECLKNHAAAIGGNATDGCGEFMASGDDDSLEALNCCACNCHRNFHRKESDSQHYALSLIPDHNINPPFLAHLSPIKSESNSPSHQSYYEKDCIKEVENRTEKMIKKRSRTKFSKEQKEKMLCFAEKAEWKIQKLEESVVQKFCQEIGIKRRILKVWMHNNKNTFSKRNVCSISRKF 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1766g00005 186 Gene3D - 103 176 - -
Vivi1766g00005 186 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 173 - -
Vivi1766g00005 186 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 9 58 IPR006456 -
Vivi1766g00005 186 NCBIfam homeobox domain, ZF-HD class 115 172 IPR006455 -
Vivi1766g00005 186 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 8 58 IPR006456 -
Vivi1766g00005 186 Pfam ZF-HD protein dimerisation region 7 59 IPR006456 -
Vivi1766g00005 186 FunFam Zinc-finger homeodomain protein 2 103 176 - -
Vivi1766g00005 186 SUPERFAMILY Homeodomain-like 112 176 IPR009057 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1766g00005 3 178 ZF-HD Transcription Factor Family AT1G14440 52.764 6.23e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vivi1766g00005 ZF-HD_dimer 7.6e-27 No_clan