Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1766g00003 ATGATCTGTTATCTGTTCAGGCGTTTGAGGGCATTCAAGCGTTGGATGAAATCCAACGGATTCGAATGGAGCAATGCATTGGAGTTTGTAGACACCCCTGAACAAGGAATAGCTGTTAAAGCATTGTGCCAAATGAATGAAGGTGATGTGGTTGCTAAAATGCCAAAGGAAGCTTGTCTTACAATCAAGACCAGTGGTGCATGTGACATCATTGAAAATGCTTGTTTGGGTGGTTATTTGGGTCTTGCTGTTGCTATCATGTATGAGAGAAGTTTGGGTGAGGAGTCTCCTTGGGCTGGTTATCTTCAGCTTTTGCCTCAACAAGAGTCTTTGCCTTTGGTTTGGACTCTTGATGAAGTGAGCCACCTTTTGTGTGGCACTGAGCTTCAACAGACAGTGCAAGAAGACAAAGCTCTTGTGTATGAGGACTGGAAAGAGAATATTCTACCCCTGTTGGATTCAGAACCTTCAAAGCTTAACCTGACGTTCTTCGGTGTGGAACAGTACTTTGCAGCCAAAAGTCTTATTTCTTCTAGATCTTTCGAGATAGATGATTACCATGGCTTTGGTATGGTTCCCCTAGCAGATCTATTCAATCATAAAACGGGTGCGGAAGATGTGCATTTTACCGCTTTGTCTTCTAATGATGAATCTGAAGACGATTCTGACGAAGGAATTGTTGATGAAGAAGCATTAGCTCAAAATTCATCTATGGATAAGACTGAGAAGGGTGTGGTTAGTGACACGGAGTATTCTTCGGTTACTGAGGACGATACATCAATGCTGGAGATGGTTATGATAAAAGATGTTAGCAGTGGAGCCGAGGTATTTAATACTTACGGCTTATTAGGTAATGCCGCTTTGCTACACAGATATGGATTTACCGAGCAAGATAATGCGTATGATATTGTAAACATTGATATGGAGCTGGTACTTCAATGGTGTACTTCTCTATTCTCTGACCGCCACAGCAGATCAAGAATCTCCCTTTGGAGAAGGTTAGGCTATTCCGGTGACAGCGAAAACTCAGAATATTTCGAGATATCATTTGATGGAGAACCGCAGATTGAACTCGTCATTTTATTACACATCATATTTTTACCAGATGATGTCTACCATAAATTAGACTTAACAGTAGCCGTTGCTGGAAATTATGAGACTAGTATGAGCAAGAAACCATTGATGACAAAAGAAATTTGCGCAGCTTTGTTGTCACTGGCTGATATAAGGGAGAGTCTCTATGGTTTGAAATCAATGGAAGATGATGTTGAGGCGCTGGAAAGGTGTAGTTTTGTTGAAGACAGAAAGGTGTATCATTCTTTGGTTCTGCGTATCAGTGAAAGGAAGATCATTCAAAAACTCAGAAATTATGCTTCAAAGTCATGTAAGATTACTAAACCTAGTTCTGCCAGGAAGAAGGTGAAAAGGACAGCATAG 1437 0.4092 MICYLFRRLRAFKRWMKSNGFEWSNALEFVDTPEQGIAVKALCQMNEGDVVAKMPKEACLTIKTSGACDIIENACLGGYLGLAVAIMYERSLGEESPWAGYLQLLPQQESLPLVWTLDEVSHLLCGTELQQTVQEDKALVYEDWKENILPLLDSEPSKLNLTFFGVEQYFAAKSLISSRSFEIDDYHGFGMVPLADLFNHKTGAEDVHFTALSSNDESEDDSDEGIVDEEALAQNSSMDKTEKGVVSDTEYSSVTEDDTSMLEMVMIKDVSSGAEVFNTYGLLGNAALLHRYGFTEQDNAYDIVNIDMELVLQWCTSLFSDRHSRSRISLWRRLGYSGDSENSEYFEISFDGEPQIELVILLHIIFLPDDVYHKLDLTVAVAGNYETSMSKKPLMTKEICAALLSLADIRESLYGLKSMEDDVEALERCSFVEDRKVYHSLVLRISERKIIQKLRNYASKSCKITKPSSARKKVKRTA 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1766g00003 478 CDD SET_LSMT 26 295 - -
Vivi1766g00003 478 Gene3D set domain protein methyltransferase, domain 1 5 294 - -
Vivi1766g00003 478 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 8 424 - -
Vivi1766g00003 478 SUPERFAMILY SET domain 7 299 IPR046341 -
Vivi1766g00003 478 Pfam SET domain 36 281 IPR001214 GO:0005515
Vivi1766g00003 478 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 291 464 IPR036464 -
Vivi1766g00003 478 MobiDBLite consensus disorder prediction 237 252 - -
Vivi1766g00003 478 PIRSF RMS1_SET 4 462 IPR011383 GO:0016279|GO:0018026
Vivi1766g00003 478 MobiDBLite consensus disorder prediction 230 252 - -
Vivi1766g00003 478 ProSiteProfiles SET domain profile. 25 281 IPR001214 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1766g00003 7 474 NAC Transcription Factor Family AT3G56570 53.626 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi1766g00003 SET 5.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1766g00003 - K05302 vra:106769924 693.73