Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi175g00009 ATGGCTTATTCCTCCAATTTCTTTTCACAAGACCATTCACTCACTTTGAATCCAAAAACCCACCACGAGTTTCTCCCCTTCAACGAAAACGACCCCGAAGAGATGCTTCTATACGGCATGATAACATCATCATCATCATCATCATCATCATCATCATCATCTTCACAACAACAACAACAAAAACTAACCACTAGTAACAAAGAGAAAACCACCAAGTCCTACCGCGGCGTTCGACGGAGACCGTGGGGGAAATTCGCGGCGGAGATACGAGACTCAACTCGGCATGGCATAAGGGTTTGGCTTGGAACATTCGACAGTGCTGAAGCGGCGGCACTGGCTTATGATCAAGCTGCTTTTGCAATGAGAGGTTCAGCTGCAATACTGAATTTTCCGGTTGAGAAGGTGAGGGAGTCGCTTAGGGATATGAATTATGTGGTGTCTGAGGATGATGAGTGTTCGCCTGTTGTTGCTTTGAAGAGGAAGCATTCGATGAGACGGAAAATGGATGAGAAGAAGAAGAAACATGAGAGAGATGTTGTTGGGATAGATAATTTGGTCGTGTTTGAAGATCTTGGTGCTGAATATTTGGAACAGTTGTTGATGTCTTATTGTTGA 615 0.4423 MAYSSNFFSQDHSLTLNPKTHHEFLPFNENDPEEMLLYGMITSSSSSSSSSSSSSQQQQQKLTTSNKEKTTKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFAMRGSAAILNFPVEKVRESLRDMNYVVSEDDECSPVVALKRKHSMRRKMDEKKKKHERDVVGIDNLVVFEDLGAEYLEQLLMSYC 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi175g00009 204 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
Vivi175g00009 204 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700|GO:0006355
Vivi175g00009 204 Gene3D AP2/ERF domain 72 133 IPR036955 GO:0003700|GO:0006355
Vivi175g00009 204 MobiDBLite consensus disorder prediction 43 75 - -
Vivi175g00009 204 SUPERFAMILY DNA-binding domain 73 133 IPR016177 GO:0003677
Vivi175g00009 204 SMART rav1_2 73 137 IPR001471 GO:0003700|GO:0006355
Vivi175g00009 204 FunFam Ethylene-responsive transcription factor 2 72 133 - -
Vivi175g00009 204 PANTHER DNA-BINDING DOMAIN 46 199 IPR044808 GO:0003700|GO:0009873
Vivi175g00009 204 CDD AP2 72 132 IPR001471 GO:0003700|GO:0006355
Vivi175g00009 204 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Vivi175g00009 204 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Vivi175g00009 204 MobiDBLite consensus disorder prediction 43 70 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi175g00009 25 202 AP2-EREBP Transcription Factor Family AT3G23240 63.536 2.06e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi175g00009 AP2 6.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi175g00009 K14516 - qsu:111996147 233.802