Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi175g00008 ATGATAAATTCACAACATTCAACATATCCTATAGAATCTAACATGTATTTTACGACCAACAAAAGCACTATCCATCATGTTTCAAATGCACCATTATTTTTGCCAAATGCTTTTCCACCTATCCAACATATTAATCCAAATTCCGTCACAAATTTTCCCGTCGTAGCAATCATTGTAATAGGAATGATGGCCACGTCTCTCTTGCTTATGGCCTATTATATTCTTGTTATCAAATGTTGTCTTGATTGGAACAATATTGATCTTGTGAGAGGAAGACGGTTTTCTTTTTCAAGACAAAATGATCAAAATCAATCTTCATCATACTCGATGACATCGGAGCCAAGAGGATTAGAACAAGTAGTGATTAATTCGATTCCGATTATTCGCTACAAAGAAGAAAAGGAATATGGTCATGATGAAAGAGTTTCTTGTGAATGTGCTTTTTGCTTGAATGAGTTTGAACAAGATGAGAAACTTAGAGCTATACCTAATTGTAACCATTTATTTCATATTGATTGTGTTGATGTTTGGCTTCAAAACAATGCAAATTGTCCACTTTGTAGAAGAAGAGTTTCTTTGACAAGAGAAACCAAAAATGTTGAAAACATCATTGGTGATTGTGAAGATTTTGTTGTGATTGATTTGGATCATGAAAATGAACATGATGATGATGAAGGACAAAACTTGCATGAAAGAAGACATGAAAGAGGTCAAGAATTGCTGGTGTCTCCAAGTGATTATATTAGTACTAATTCACACAAGAAAGCAATTAAGCTTCATAAAGTTAGTAGTATGAAGGATAAGGGTATAATTGGTATTAATGATAAAGATGATGGTTTTTTAGTCCAACCAATTAGAAGGTCTTTTTCATTGGACTTGTCCATTGAAGTTTGCGGTGATAGTAGTGGTAGAGCTAAGAGATCATTATTTTCATTTGGACATGGAAGTAGATCGAGAGATGTTGTATTACCTATTCATTTGGACCCTTGA 990 0.3364 MINSQHSTYPIESNMYFTTNKSTIHHVSNAPLFLPNAFPPIQHINPNSVTNFPVVAIIVIGMMATSLLLMAYYILVIKCCLDWNNIDLVRGRRFSFSRQNDQNQSSSYSMTSEPRGLEQVVINSIPIIRYKEEKEYGHDERVSCECAFCLNEFEQDEKLRAIPNCNHLFHIDCVDVWLQNNANCPLCRRRVSLTRETKNVENIIGDCEDFVVIDLDHENEHDDDEGQNLHERRHERGQELLVSPSDYISTNSHKKAIKLHKVSSMKDKGIIGINDKDDGFLVQPIRRSFSLDLSIEVCGDSSGRAKRSLFSFGHGSRSRDVVLPIHLDP 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi175g00008 329 SMART ring_2 146 187 IPR001841 -
Vivi175g00008 329 FunFam E3 ubiquitin-protein ligase ATL6 105 194 - -
Vivi175g00008 329 Pfam Ring finger domain 145 188 IPR001841 -
Vivi175g00008 329 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Vivi175g00008 329 PANTHER RING-H2 FINGER PROTEIN ATL16 42 325 IPR044600 GO:0016567|GO:0016740
Vivi175g00008 329 CDD RING-H2_EL5-like 145 188 - -
Vivi175g00008 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 193 IPR013083 -
Vivi175g00008 329 SUPERFAMILY RING/U-box 121 197 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi175g00008 47 296 C3H Transcription Factor Family AT1G04360 41.319 8.26e-60 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi175g00008 - - vvo:131625857 664.07