Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi175g00007 ATGGATTCTCTAGAGTTAGGAAACTCCGATTCTTGGGATTTTCTCGATTACTCATTCATCGATCCTCCTCCCACCGATTTCCTTTGGTCCAATCCAAGTGATTTTGCGAGTATGAACACGGAAATTGACGTTCGAAGCAGTGATTTTGCAAGTGTGAGTGCAGACATTGACATTCCGAGTGGTGTTGTTGCGTGTCAAGAAGAGAATAATACCAGGAAGAGGGGACGCGGTGAATCATGTCACAAGGCAGGAACAAAAGCTTGCCGTGAGAAAATGCGGAGGGAGAAACTCAATGAAAGGTTTTGCGATTTGAGCGCTGTTTTGGATCCCGGGAGGCCTGTGAGAACAGATAAGCCTGCTATACTTGATGATGCTATCAGAGTCTTGAACCAACTTAAAACTGAAGCTGAGGAACTCAAAGAAACAAATGGAAAATTGTTAGAGGAAATAAAATGTTTGAAGGCAGAGAAAAATGAACTCCGCGAAGAGAAACTTGTTCTGAAAGCTGATAAAGAAAAGATGGAGAAACAGCTGAAAACTTTGCCTATTTCACCAGCAGGATTTATGCCTCCTCCTCCTCCTATGGCTGCTTATCAAGCAAGCGTGAACAAGATGGCTGTTTATCCAAACTATGGATATATCCCAATGTGGCAATATCTTCCCCAATCAGCTCGCGATACATCCCAAGATCACGAGCTCAGGCCTCCTGCCGCCTAG 717 0.4421 MDSLELGNSDSWDFLDYSFIDPPPTDFLWSNPSDFASMNTEIDVRSSDFASVSADIDIPSGVVACQEENNTRKRGRGESCHKAGTKACREKMRREKLNERFCDLSAVLDPGRPVRTDKPAILDDAIRVLNQLKTEAEELKETNGKLLEEIKCLKAEKNELREEKLVLKADKEKMEKQLKTLPISPAGFMPPPPPMAAYQASVNKMAVYPNYGYIPMWQYLPQSARDTSQDHELRPPAA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi175g00007 238 SMART finulus 87 138 IPR011598 GO:0046983
Vivi175g00007 238 Coils Coil 122 177 - -
Vivi175g00007 238 Gene3D - 84 163 IPR036638 GO:0046983
Vivi175g00007 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 132 IPR011598 GO:0046983
Vivi175g00007 238 FunFam Transcription factor bHLH104 84 165 - -
Vivi175g00007 238 CDD bHLH_AtILR3_like 86 161 - -
Vivi175g00007 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 146 IPR036638 GO:0046983
Vivi175g00007 238 PANTHER BHLH TRANSCRIPTION FACTOR 8 238 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Vivi175g00007 238 Pfam Helix-loop-helix DNA-binding domain 85 132 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi175g00007 71 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 70.414 3.16e-78 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi175g00007 HLH 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi175g00007 - - mtr:11419849 353.214