Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi175g00006 ATGAAGGATTTCTCTGGGACACCTGGAACTTTTCTTGGCTTGATTCTTAGAATGTCACAGCTCATTTTTGCTGCTGCCTCAATTGCTTCCATTGCTACTGTTACATCACCCAGTTTCTCAAATTTCACTGCATTTTGTTTCTTGTGTGTTTCTAGTGTATTAATCGTTTGGAGTTTTGTACTTGCTTTGTTGGATGCATATGCTTTGGTGAGAAAGAAGATCCTTCTTAACCCTTCTTCAATAGGCATCTTAACTATTGGAGATTGGGGAAAATCAACATACTCTTTAGCTGCAGCTTCTGCTTCAGCTGGTATTCCAATTTTCTATTTCAATGATACTGGACATTGCCATTTTGGAGAGGAGTGCCGAAAGTACCACATTTCTGTTGCTTTTGCATTCATGAGCTAG 408 0.3922 MKDFSGTPGTFLGLILRMSQLIFAAASIASIATVTSPSFSNFTAFCFLCVSSVLIVWSFVLALLDAYALVRKKILLNPSSIGILTIGDWGKSTYSLAAASASAGIPIFYFNDTGHCHFGEECRKYHISVAFAFMS 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi175g00006 135 PANTHER CASP-LIKE PROTEIN 5B3 1 135 IPR045009 -
Vivi175g00006 135 Pfam Casparian strip membrane protein domain 8 134 IPR006702 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi175g00006 DUF588 1.6e-16 CL0396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi175g00006 - - vvo:131625854 257.684