Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi175g00001 ATGACATCTAAAAATATTGATTGGAAGCCAATGATTGGTATGGAATTTGATTCATCAGAGGCAGCTTTTCAATTTTGGCTCGCATACGGTGCACACGTTGGCTTTGGCGTTAGAAAACGTTACGTGAACAAGAATAAAAAAACAGGTTCTATATCATCATGCCGGTTTGTTTGTTGCAAGGAAGGACTACGACAAACAGACAAGAGAGATGCGTTTGTTAGTAACCATAGAGCTGAAACAAGAACTGATTGCAAAGCAAGGATTTCTATTATATTGAAGAATGAAAAATTTGTTATTCATGAATTCATAGAGGATCATAATCACTCTTTGCAACAACCAGAGACCACACACATGCTAGCATCACATATAAAGATAACTGAGGTCAAAGCATATGAAATTGATTTAGCTTATAACTCTGGATTACGACAGAAGTCGACATTTCAACTTATGTGCACACAGGAGGGGCATAGTTCTAATCTTGGATATACACGTTTGGATATAAAAAATTATCTCAATGCAAGAAGACAAAGAAGCATGGTGTACGGTGATGCTGGATGTCTTTCACAATACTTTCAGCGGCAATTGTTGGAGAATCCATCGTTTTTTCATGCATATCAGATGGATGTAGAAGAACAAATTACAAATGTGTTTTGGTGTGATGCAAATATGGTTTTAGATTACGGATACTTTGGTGATGTGGTGTCATTGGACACTACATATTGTACGAACCATGCTAATAGACCACTCACAATCGAGTCATTTAAATGGTTATTTGATACATTCTTACAGGCACATAGCAACAAAAAGCCAAAGACTATCTTTACCGACCAATATCAAGCAATGGCTAGAGCACTTGCTGAAGTAATGCCTGAGACTCACCATGGTTTATGCACCTGGCACTTGTTGCAGAACGAAATCAAACACCTTGGGAATTTGATGAAGGGTGGAAGCTTTTTTTTAAGAGATTTCAAAAAATGCATGTTTGAATTCGACCTCGAAGCATATTTTGAGATAGCTTGGGCTGATTTGGTTAATAATTACAATCTTCATGAAAATAATTGGATCAAATCTGTTTATACTATTAAAAGAAAATGGGCTTCATGTTACATGAAGAAAGCATTCACACTTGGCATGCGAAGTACACAAGTCAATGAAAGTTTAAATGCTCACTTCAAATCTTGTATGAAACCGAATGTGGATATCATGCAATTCTTCAAACACGTTGAACGAGTTGTTGAGGAGAAGAGAGGAAACGAGTTAAGTTGTGATTATGAGTCATCGCATAAGCTTGCAAGGTTAAAATATGAGATGTCTCCAATAATATTACAGATGGCAAAAGTACACACACACACTGTATTTGAGTTTTTCCAAAATGAGTTTAAGTTGTTATTAACTTTATCAATATCAAAGAGAAACGAGTCTCCATCTTTAAGCGAGTATGTTATCACTATGGTCAATCATGAAGGATCTTGGAAGGTATCATTTGACCGTACTTCAATCTCCATTACTTGTAGTTGTAGAAAGTTTGAAACTTTTGGCATACTTTGTTCACATGCATTAAAAGTGTTTGAAGTGAACGATGTCAAGGCTATTCCCGTGAGGTACATTTTACGAAGGTGGACAAGGGAAGCTCGTTGCGGCATTGTGCAAGATTTTAGGGGAAAAGAAGTTGAAGGAGATCCAATGCTATCTAGAACACGAAAACTTAGACAAATTATCTCTAAATTCATTAGAGTTGCGACTGACGCATCGTCCTACGAAGAATACCTCACAATCGTTGGTGAAAGTGTAGAAGTCGTGCGCAAGAAAATAATGGAACTTCGCTTGCAAAACAGAGACAATGACACTCATAGTAGTGAGAATCCATCATTTCTAAGTCACGGTCTTACACAACCGAAAGGATTCAAGAAACGACAGGGTTTAAAGAGACAAAAGCGACTTAAGGGTTGGGTTGAACGACAACTTGCAAAAAAAAGTATCGCATCTAGTGGAAAGTCCCACAATCAAGTATCTCAGGAAAAAGCATTAACAAGTGATTTGATCAATGGTATATCTTGTTCAACACCTCCACAAGAGGATCTGTTTAGCTTCACAACTCTTTTGATGGCGCCCCTAAATGAAACAAATACTACATCTGAAGCAACTGAAGCTCCGGCAACTGCACATCCAGTTGCTACTCCAATGCTTACTCAGCCTACAACAATTGAAGATCCCACAATGAGTTCTGTTGTTCTGTCGGTTCCTCCCGTGCTTGTAGATCCCGCCGCCTTGAATCAACCTCCGCCAGTCGTTCAACCCGCTGTGGTGTATGATATCAACGTTAATATTGTTGAGGTTATAGCTAGAGGTGGCAATTGGATCCATTAA 2367 0.3819 MTSKNIDWKPMIGMEFDSSEAAFQFWLAYGAHVGFGVRKRYVNKNKKTGSISSCRFVCCKEGLRQTDKRDAFVSNHRAETRTDCKARISIILKNEKFVIHEFIEDHNHSLQQPETTHMLASHIKITEVKAYEIDLAYNSGLRQKSTFQLMCTQEGHSSNLGYTRLDIKNYLNARRQRSMVYGDAGCLSQYFQRQLLENPSFFHAYQMDVEEQITNVFWCDANMVLDYGYFGDVVSLDTTYCTNHANRPLTIESFKWLFDTFLQAHSNKKPKTIFTDQYQAMARALAEVMPETHHGLCTWHLLQNEIKHLGNLMKGGSFFLRDFKKCMFEFDLEAYFEIAWADLVNNYNLHENNWIKSVYTIKRKWASCYMKKAFTLGMRSTQVNESLNAHFKSCMKPNVDIMQFFKHVERVVEEKRGNELSCDYESSHKLARLKYEMSPIILQMAKVHTHTVFEFFQNEFKLLLTLSISKRNESPSLSEYVITMVNHEGSWKVSFDRTSISITCSCRKFETFGILCSHALKVFEVNDVKAIPVRYILRRWTREARCGIVQDFRGKEVEGDPMLSRTRKLRQIISKFIRVATDASSYEEYLTIVGESVEVVRKKIMELRLQNRDNDTHSSENPSFLSHGLTQPKGFKKRQGLKRQKRLKGWVERQLAKKSIASSGKSHNQVSQEKALTSDLINGISCSTPPQEDLFSFTTLLMAPLNETNTTSEATEAPATAHPVATPMLTQPTTIEDPTMSSVVLSVPPVLVDPAALNQPPPVVQPAVVYDINVNIVEVIARGGNWIH 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi175g00001 788 SMART 26again6 502 529 IPR006564 GO:0008270
Vivi175g00001 788 Pfam SWIM zinc finger 502 524 IPR007527 GO:0008270
Vivi175g00001 788 MobiDBLite consensus disorder prediction 612 642 - -
Vivi175g00001 788 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 7 593 IPR031052 GO:0006355
Vivi175g00001 788 ProSiteProfiles Zinc finger SWIM-type profile. 491 527 IPR007527 GO:0008270
Vivi175g00001 788 Pfam MULE transposase domain 252 304 IPR018289 -
Vivi175g00001 788 Pfam FAR1 DNA-binding domain 24 111 IPR004330 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi175g00001 FAR1 1.4e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi175g00001 - - vvo:131625860 1542.32