Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi1750g00004 | ATGCGACTGAAGGCCATAATTGCAAATGGAAATACGTGTGTAAACCAAATTAAATGGACAAATTCAAATGGTTTAGTATCCATTTCCTTAAATGAATTGAACTCGTTTGTGAGTAATCTTCTCATTCAAGTTAAGCTTCATATTCTCCTGCTTGATCAATTTATCAGCAAGGATCAACTCCCTCCATGGGCTGAGTCGGAGGATGTATCATCACTTCATACAAGTGAATTTCATGTCGTGGATGTTTTTGTTGCAATAGATGGAACTGAAAATTTCATTAGAATGGTTGATGCGATGTTGTCTTCACCTTTTCGCATCACGAGACGTTATGTCATTCACGTGAAAAATTGGGTTTATAATGAACACATTATTGTTGATCAAGATGAATGGAACATTGTCATTGTTTGA | 408 | 0.3578 | MRLKAIIANGNTCVNQIKWTNSNGLVSISLNELNSFVSNLLIQVKLHILLLDQFISKDQLPPWAESEDVSSLHTSEFHVVDVFVAIDGTENFIRMVDAMLSSPFRITRRYVIHVKNWVYNEHIIVDQDEWNIVIV | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi1750g00004 | 135 | Gene3D | - | 78 | 135 | IPR012334 | - | |
| Vivi1750g00004 | 135 | Pfam | Pectinesterase | 81 | 135 | IPR000070 | GO:0030599|GO:0042545 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi1750g00004 | 3 | 135 | Carbohydrate Esterase | AT3G43270 | 32.877 | 6.61e-18 | 77.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi1750g00004 | K01051 | - | vvo:131642742 | 268.855 |