Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi174g00005 ATGACGGAACGTTCTCAAAAAGAAAAGGTTTTCCGAACAATGGAAAACGACAATGTCGTTTTCAGAAACGGCAATCCAGTTCTCGTCGCTCAGCCACTCACCGTTGTCCGTGCCCTAACCAGCAACGGCGGCGGCCGCGTTCTTGCAACGCCGCCGAGTCTGAACCCTAACTCCGATCAGTTCGAAGCACGCGAATCGCCGATGATCAAAGTGAAGGACGAGCCTCAAGAAGATGTCAAACCTTTCACTTTATGCTCTCAATCTGCGGCGAATGTTTCTGTGGAGCCACGTTCAATGCTCTTGTTCGATGATTTTTTAAAGGCTACGAATACACAAGTTGCCACTGTCGAGGAATCGATGAAATCAATGGAAGTTGAATCAACGATTCAAACGAAGACGCAGGAATTGGTTAAGGCTGAATTGGTAGATGAATCGCTGAAATCAATGGAAGTTGAACCACCTATGAGGACTAAGGAAGAAGCTGTCAATGTCAATATGGTTTGTGAGGCACAGGAATCGGTTACTGTAGATCCGATTAAAGAGCCAACGCGGGTTCAACCAAATGAAGAGGCTTCCAAGGAGAAGGGAACTGATAGTGATGAATTGGAGGTGTTGAAGGTAGTGAAAGGGAAAGAAGCTGTTAATGATGAATTGGAGGTGTTGAAGGTAGTGAAAGGGAAACAAGCTGTTAATGATGAAGTGAGGGTTTCGAAGGTGGTGAAGAGAGAGGCAGTGGAAGAGAAGATTCCGAATCTTGAGGATGGTGAGTTTCCTGTTGAACCTGGGTGGTCATTGCTTGGAAGGAAGATTGAGGTTGCTACTTCTACAGCTAGGGGACTGAGGAGATTGGTGGATAATGAGATTGTTTATTTCAATTTTCCTGACCCAAATACCTCTTACAAGTTCCAATGGATTGTTCGTGTCTCAACCAAACGTTCTGGAGTGGTTGGGAGGCTGCCAATGGAATGGGCAAAATCTGTCATGCCTCTTGTGCAATCGGGAAACGTTAGGGTTCGAGGCCGATGTGTTGCCACACCACATAAATTGGAAATGATGCAAGAAATAATGTTGTTAGTGAGTTTTTATGTTCATCAATCTGTATTCTCGGAGTCTGTTGATACCTCTTGGAGGCTAGAGGCTTGTGGCCACATTAACTCTGCTTCTTACCCGCTCCTTACACTGTTGAACATGCTAGATATTGAGCCTTATAGGAAGGCTGATTTCACCCCTGAGGAAATGAAGGCTCGGAAGCGGGTTCTTAAACTTGATTCAGATGAAGCTTCAGTTTTGCCTGTTAATAAGCGAAGAAAAGGCATCAGTGAGCCACTTCCAGAGCCAAACGAGAATGAACAAGCTCTTTCAGAGTCAGCTTTGAATAAACTTATTGGAGCTGCTGAAGTCTTTGACCTACAGGAGAAGGAAGCACCAAAAACCCTGTTGTGTAGGCTAAAGCCTTACCAGAGTCAAGCTCTGTATTGGATGACAGAAATTGAGAAGGGAACTGATGATGAAAATGCTGATAGAAATCTGCATCCTTGCTGGTCAGCCTACAATATATGCAATGGAAGGACAATTTATGTGAACATATTTACTGGGGAGGCGGCAAAGAAATTTCCACAAGCAACACAGAGAGCAAGAGGAGGAATTCTGGCGGATGCAATGGGACTTGGAAAGACTGTTATGACCATTGCTTTGATATTAAGTAATCCAGGCAGGGTGAAGTCAGAAGACAGTGATGCAGAGAGCACATATGACAACATATTCTCAACTAAGAGGAGGAATATTAACAATGTAGAGGGTGGCACTCTGATTGTTTGTCCCATGGCATTATTGGGTCAGTGGAAGGATGAGCTTGAAACACATTCAAAACCAGGCAGTATATCCGTATTCGTTCACTATGGTGGGGGTAGAACTGATAATGTCAATTTGTTGTTAGAGTACGATGTTGTCTTGACAACATATGGTGTCCTATCAGCTTCATTTAAAAATGATGGAGGAAATAGCATCTACCACAGGGTCCAATGGTTCAGAGTGGTGTTAGACGAAGCTCATCATATTAAAGCCCATAAAAGTCAGGTTGCCCAGGCTACTATTGCCCTGTCCTCACACTGCCGCTGGTGTCTAACTGGAACACCGCTTCAGAATAGTTTGGAAGATCTATTCAGTCTCTTGTCTTTCTTGCGCGTTGAACCTTGGTGCAGCTGGCAGTGGTGGACTAAGTTGATTCAAAAGCCCTATGAGCAGGGTGATCAAAGAGCCCTGAAATTGGTCAAGGGAATTTTAAGGACATTGATGCTAAGAAGAACCAAGGAAACAAAGGATAAAGAAGGAAGGCCTATACTTGTCCTACCACCAACTGATATTCAATTGATTGAGTGTGAACAGTCAGAATCTGAACGGGACTTCTATGATGCTCTCTTCCTGAGATCTAAAGTCCAATTTGAGCAATATGTTGCACAAGGAAAGATTCTTAACCACTATGCAAATATCCTTGACCTACTAATGCAGTTAAGACGGTGCTGCAACCATCCATTATTGGTCATGAGTGGAAGTGATCCTTCGAAGTATGCAGACCTGAGCAGACTTGCAAGAAAATTTCTCGATTCTCATACTGAATCATCTGATATGCGCTGTGAAAATGATACACAGCAAAATGCAAAACTGAACAAACTTGCTAGTACTTTCCTACAGAATTCTATTTCTGCTTCCCGTTCTATCCAATCTCATGGTTACATTGATGAGGTTTTGGGTCATATTCAAAAGGGTGAAGTTGTAGAATGCTCTATATGTTTGGAATCACCAGAAGATCCTGTTTTTACACCATGTGCACATCAGTTTTGTAGAGAATGTCTATTCAATTGCTGGGGTACCTCAATGGGTGGCAAGTGTCCAATCTGTCGTCAATTACTCAAGAAAAATGATCTTATTGTACTTCCATCAGAAAGTCCATTCAAGGTTGATACTGAGAACAATTTGACGGAGTCTTCAAAAGTTTCAAAGCTGTTTGATTTCTTAGAATATATTCAGAAATATTCTGATGAAAAAAGTATTGTTTTTAGTCAATGGACTTCATTTTTTGATCTGTTAGAAAATCCTTTGAGGAGGAGAGGGATAGGATTCTTAAGATTTGATGGAAAATTGACTCAGAAGCAGAGGGAAAAAGTTCTGAAAGAATTTAACAACACAAAAGAGAAAAGGGTTTTGTTGATGTCACTAAAAGCTGGTGGTGTGGGCTTAAACTTGACTGCAGCCTCAAATGTTTTCCTAATGGATCCATGGTGGAATCCTGCAGTTGAGGAACAAGCAATAATGAGGATTCATCGTATTGGGCAAAAGCGAAGGGTTATTGTAAGAAGATTCATTGTGAAGAACACAGTGGAAGATCGTTTGCAACAAGTGCAAGCCAAGAAACAGAAGATGATATCTGGTGCACTCACTGATGATGACGTTCGGACTTCCCGGATTCAAGACCTCAAAATACTATTCTCATAG 3492 0.4233 MTERSQKEKVFRTMENDNVVFRNGNPVLVAQPLTVVRALTSNGGGRVLATPPSLNPNSDQFEARESPMIKVKDEPQEDVKPFTLCSQSAANVSVEPRSMLLFDDFLKATNTQVATVEESMKSMEVESTIQTKTQELVKAELVDESLKSMEVEPPMRTKEEAVNVNMVCEAQESVTVDPIKEPTRVQPNEEASKEKGTDSDELEVLKVVKGKEAVNDELEVLKVVKGKQAVNDEVRVSKVVKREAVEEKIPNLEDGEFPVEPGWSLLGRKIEVATSTARGLRRLVDNEIVYFNFPDPNTSYKFQWIVRVSTKRSGVVGRLPMEWAKSVMPLVQSGNVRVRGRCVATPHKLEMMQEIMLLVSFYVHQSVFSESVDTSWRLEACGHINSASYPLLTLLNMLDIEPYRKADFTPEEMKARKRVLKLDSDEASVLPVNKRRKGISEPLPEPNENEQALSESALNKLIGAAEVFDLQEKEAPKTLLCRLKPYQSQALYWMTEIEKGTDDENADRNLHPCWSAYNICNGRTIYVNIFTGEAAKKFPQATQRARGGILADAMGLGKTVMTIALILSNPGRVKSEDSDAESTYDNIFSTKRRNINNVEGGTLIVCPMALLGQWKDELETHSKPGSISVFVHYGGGRTDNVNLLLEYDVVLTTYGVLSASFKNDGGNSIYHRVQWFRVVLDEAHHIKAHKSQVAQATIALSSHCRWCLTGTPLQNSLEDLFSLLSFLRVEPWCSWQWWTKLIQKPYEQGDQRALKLVKGILRTLMLRRTKETKDKEGRPILVLPPTDIQLIECEQSESERDFYDALFLRSKVQFEQYVAQGKILNHYANILDLLMQLRRCCNHPLLVMSGSDPSKYADLSRLARKFLDSHTESSDMRCENDTQQNAKLNKLASTFLQNSISASRSIQSHGYIDEVLGHIQKGEVVECSICLESPEDPVFTPCAHQFCRECLFNCWGTSMGGKCPICRQLLKKNDLIVLPSESPFKVDTENNLTESSKVSKLFDFLEYIQKYSDEKSIVFSQWTSFFDLLENPLRRRGIGFLRFDGKLTQKQREKVLKEFNNTKEKRVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRRVIVRRFIVKNTVEDRLQQVQAKKQKMISGALTDDDVRTSRIQDLKILFS 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi174g00005 1163 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1000 1159 IPR001650 -
Vivi174g00005 1163 Pfam Zinc finger, C3HC4 type (RING finger) 926 969 - -
Vivi174g00005 1163 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 539 730 IPR014001 -
Vivi174g00005 1163 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 781 1153 IPR027417 -
Vivi174g00005 1163 Gene3D - 784 907 IPR027417 -
Vivi174g00005 1163 FunFam DNA repair protein RAD5B 536 769 - -
Vivi174g00005 1163 Gene3D - 976 1161 IPR027417 -
Vivi174g00005 1163 SMART HIRAN_2 266 363 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vivi174g00005 1163 SMART ultradead3 479 749 IPR014001 -
Vivi174g00005 1163 CDD DEXDc_SHPRH-like 483 768 - -
Vivi174g00005 1163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 922 975 IPR013083 -
Vivi174g00005 1163 SMART helicmild6 1027 1110 IPR001650 -
Vivi174g00005 1163 Pfam SNF2-related domain 486 846 IPR000330 GO:0005524|GO:0140658
Vivi174g00005 1163 SMART ring_2 927 966 IPR001841 -
Vivi174g00005 1163 Pfam Helicase conserved C-terminal domain 999 1110 IPR001650 -
Vivi174g00005 1163 Coils Coil 106 126 - -
Vivi174g00005 1163 CDD SF2_C_SNF 983 1121 - -
Vivi174g00005 1163 ProSitePatterns Zinc finger RING-type signature. 942 951 IPR017907 -
Vivi174g00005 1163 SUPERFAMILY RING/U-box 923 977 - -
Vivi174g00005 1163 ProSiteProfiles Zinc finger RING-type profile. 927 967 IPR001841 -
Vivi174g00005 1163 Gene3D - 534 780 IPR038718 -
Vivi174g00005 1163 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 297 1162 - -
Vivi174g00005 1163 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 469 768 IPR027417 -
Vivi174g00005 1163 Pfam HIRAN domain 278 357 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi174g00005 237 1162 RAD5 or RAD16-like Gene Family AT5G43530 60.128 0.0 1156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi174g00005 SNF2_N 3.3e-81 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi174g00005 K15505 - gmx:100806677 1455.65