Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1748g00002 ATGTCTCCTATGTTTCTGTTCCTCTTTCTCTCTTTCATTCTCCTTCAAGTTCAACCAGTTTTCTCTCTCAACCAAGAAGGTCTCTACCTGTACCAATTCAAGCTCTCCCTAGACGATCCCGACTCTTCTCTCTCCTCATGGAACAACCGCGACCAAACACCGTGTAACTGGTCCGGCATAACCTGCCACAACCAAACCACCACCACCACCGTAACTCAAATCAACCTCTCCAACTTCAACCTCGCCGGTCCACTACCAACCTCAATCCTCTGTCGTTTAACCAACCTCACCACTCTAATCCTCACCAACAACTCCATCAACCAAACACTCCCTCCAGACATTTCTCTTTGCACCTCCCTCTCTCACTTAGACCTCTCTCAAAACCTCCTCACTGGCACACTCCCAGAGACATTCCCTCTCCTCACTAACCTCCGTTATCTCGACTTAACGGCTAACAACTTCTCCGGCTCAATCCCAAACTCCTTCGGAACATTCCAGAAACTCGAAGTCATTTCACTAGTTTACAATCTTCTAGAATCCTCCATTCCCGCTTCGTTAGGAAACATCACCACTCTCAAAACTCTGAATCTCTCCTATAATCCGTTTCTACCGTCTCGGATTCCGCCGGAGATCGGAAACCTAACCAACCTCGAGATTCTCTGGCTTAGTTCATGTAATCTCGTCGGTGTTATTCCTCACTCATTCGGGAATTTGAAGAAACTCTCTGTGCTTGATCTTTCCATGAATAATCTTCAAGGTTCTATTCCGAGTTCGCTTTCTTTGATGACGAGTTTGAAGCAGATTGAGCTTTATAACAACTCGTTGTCCGGTGAGTTACCGTCCGGAATGTCGAACCTTACTTCGTTGAGGCTGATTGATGTTGCTATGAATAGTATTGGTGGTGTTATACCAGATGAGTTGTGTCGTTTACCGCTTGAGAGTTTGAATCTGTATGAGAATCGGTTTACCGGTGAGTTGCCGGCGAGTATAGCCGAATCTCCTAATCTCTACGAGTTTAAGATTTTTACAAACTTTTTATCCGGTGAGTTGCCGGAGAATCTCGGGAAGAATGGTCCGTTGATATGGTTTGATGTTTCAAATAATTCGTTCTCCGGTAAGATTCCGGCGAGTTTGTGCGAGCGCGGCGCGTTGGAGGAGTTACTGATGATACATAATTCGTTCTCCGGTGAAATACCAGCGAGTTTAGGTGGTTGTAGAAGTTTGGCGCGTGTTAGGTTAGGTTTTAACAAGTTGTCTGGCGAAGTTCCGGCGGGTTTTTGGGGGCTGCCGCATGTTTATCTTCTTGAACTTGTTGACAACTCGTTTTCGGGTTCGATTGGTAAGACTATTGGTGGAGCTGGGAATCTGTCTTTGTTGATTTTATCGAATAATAATTTCTCTGGTGCAATTCCTGAAGAGATTGGGAGGTTGGAAAATCTTCAGGAGTTTTCCGGTGGTAATAACCGGTTCAACTATTCGTTGCCGGAGAGTATTGTGAATCTTTCCCAGCTTGGGATTCTTGATCTTCACAACAATAAGATCTCTGGTGAGCTTCCAGAAGGAATTCCATCGCTTAAGAAACTCAACGAGTTGAATTTGGCGAATAACGAGATTGGTGGGGAAATTCCTGAGAAAATTGGGAGTATGTCTGTGCTTAACTTTCTTGATCTTTCCAGTAATCGGTTTTCGGGAAATGTTCCGATGAGTTTGCAGAATTTGAAGCTCAATCAGCTGAATTTGTCTTACAATTTGCTTTCTGGAGAGATTCCGCCTCTTATGGCTAAGGATATGTATAGGGATAGTTTTATCGGTAATCCTGGATTGTGCGGAGATTTGAAAGGTTTGTGTGATGCCAAAGGAGAGAGTAAGAGTGCTGATTTTGTTTGGCTGCTTAGAGCTATTTTCATAGTTGCGGCTTTGGTTTTTGTCTTTGGTGTGGTTTGGTTCTACTTCAAGTACAAGAATATTAAGAAGGCGAGATCTATCGATAAAACAAAATGGACATTGATGTCGTTTCATAAACTTGGTTTCGGTGAAGACGAGGTCTTGAATTGTCTTGATGAAGATAATGTCATAGGAAGCGGGTCGTCCGGGAAAGTCTACAAGGTTGTGCTTCGCAACGGTGAAGCTGTTGCAGTGAAGAAGATATGGGGAGGAGTTCAAATGGAGACGGAGAGTGGTGATACTGAAAAGAAACAATTCCAAGATAATGCTTTTGACGCGGAGGTTGAAACTTTGGGCAAGATTAGGCACAAAAACATTGTCAAACTATGGTGTTGTTGTACTACGAGGGATTGCAAGCTTTTGGTTTACGAGTATATGCCGAACGGTAGTCTTGGTGATTTGCTGCATAGCAATAAAGGAGGGTTGTTGGATTGGCCGACTAGGTATAAGATAGCTCTCGATTCTGCCGAAGGCCTCTCTTATCTGCATCATGATTGTGTTCCTCCGATAGTCCATAGAGATGTGAAATCGAATAACATCTTGTTGGATGAAGACTTTAGTGCAAAGGTTGCAGATTTCGGGTTAGCTAAGGCGGTTGAATCCAATGGGAAAGGAACTAAATCCATGTCCGTCATAGCTGGTTCTTGTGGTTATATTGCACCAGAATATGCATACACGCTTAGAGTGAACGAGAAGAGCGACACATATAGTTTCGGTGTTGTGATCCTCGAGTTAGTCACCGGAAGAAAGCCAGTAGATCCCGAATTCGGAGAAAAAGACTTAGTTATGTGGGCATGCAACACCTTAGATCAGAAAGGTGTCGACCACGTGCTTGACTCAAGGCTCGATTCTTTCTTCAAAGAAGAAATTTGCAAGGTCCTCAACATTGGCCTAATGTGCACTAGTCCTCTTCCAATCAACCGGCCCGGAATGAGAAGAGTAGTGAAAATGCTACAAGAAGTAGGCCCTGAAAGCCAATCAAAGTCCTCCCAAAAAGCCGGAAAGTTGTCCCCTTATTACTACGATGACGGGTCAGATCATGGAAGTGTTGCTTAA 3000 0.4407 MSPMFLFLFLSFILLQVQPVFSLNQEGLYLYQFKLSLDDPDSSLSSWNNRDQTPCNWSGITCHNQTTTTTVTQINLSNFNLAGPLPTSILCRLTNLTTLILTNNSINQTLPPDISLCTSLSHLDLSQNLLTGTLPETFPLLTNLRYLDLTANNFSGSIPNSFGTFQKLEVISLVYNLLESSIPASLGNITTLKTLNLSYNPFLPSRIPPEIGNLTNLEILWLSSCNLVGVIPHSFGNLKKLSVLDLSMNNLQGSIPSSLSLMTSLKQIELYNNSLSGELPSGMSNLTSLRLIDVAMNSIGGVIPDELCRLPLESLNLYENRFTGELPASIAESPNLYEFKIFTNFLSGELPENLGKNGPLIWFDVSNNSFSGKIPASLCERGALEELLMIHNSFSGEIPASLGGCRSLARVRLGFNKLSGEVPAGFWGLPHVYLLELVDNSFSGSIGKTIGGAGNLSLLILSNNNFSGAIPEEIGRLENLQEFSGGNNRFNYSLPESIVNLSQLGILDLHNNKISGELPEGIPSLKKLNELNLANNEIGGEIPEKIGSMSVLNFLDLSSNRFSGNVPMSLQNLKLNQLNLSYNLLSGEIPPLMAKDMYRDSFIGNPGLCGDLKGLCDAKGESKSADFVWLLRAIFIVAALVFVFGVVWFYFKYKNIKKARSIDKTKWTLMSFHKLGFGEDEVLNCLDEDNVIGSGSSGKVYKVVLRNGEAVAVKKIWGGVQMETESGDTEKKQFQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSNKGGLLDWPTRYKIALDSAEGLSYLHHDCVPPIVHRDVKSNNILLDEDFSAKVADFGLAKAVESNGKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDTYSFGVVILELVTGRKPVDPEFGEKDLVMWACNTLDQKGVDHVLDSRLDSFFKEEICKVLNIGLMCTSPLPINRPGMRRVVKMLQEVGPESQSKSSQKAGKLSPYYYDDGSDHGSVA 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1748g00002 999 ProSiteProfiles Leucine-rich repeat profile. 240 262 IPR001611 GO:0005515
Vivi1748g00002 999 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524
Vivi1748g00002 999 SUPERFAMILY Protein kinase-like (PK-like) 682 966 IPR011009 -
Vivi1748g00002 999 SUPERFAMILY L domain-like 38 395 - -
Vivi1748g00002 999 FunFam Receptor-like protein kinase HSL1 311 618 - -
Vivi1748g00002 999 Gene3D Phosphorylase Kinase; domain 1 671 773 - -
Vivi1748g00002 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 774 983 - -
Vivi1748g00002 999 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 23 189 - -
Vivi1748g00002 999 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515
Vivi1748g00002 999 Pfam Leucine rich repeat 216 275 IPR001611 GO:0005515
Vivi1748g00002 999 Gene3D Ribonuclease Inhibitor 22 204 IPR032675 -
Vivi1748g00002 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Vivi1748g00002 999 Gene3D Ribonuclease Inhibitor 519 610 IPR032675 -
Vivi1748g00002 999 Gene3D Ribonuclease Inhibitor 205 428 IPR032675 -
Vivi1748g00002 999 Gene3D Transferase(Phosphotransferase) domain 1 774 991 - -
Vivi1748g00002 999 ProSiteProfiles Protein kinase domain profile. 686 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1748g00002 999 SUPERFAMILY RNI-like 313 592 - -
Vivi1748g00002 999 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Vivi1748g00002 999 FunFam Receptor-like protein kinase HSL1 670 773 - -
Vivi1748g00002 999 MobiDBLite consensus disorder prediction 968 999 - -
Vivi1748g00002 999 Pfam Protein kinase domain 688 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1748g00002 999 Gene3D Ribonuclease Inhibitor 429 518 IPR032675 -
Vivi1748g00002 999 SMART serkin_6 686 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1748g00002 999 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 217 966 - -
Vivi1748g00002 999 FunFam Leucine-rich receptor-like protein kinase family protein 207 305 - -
Vivi1748g00002 999 PRINTS Leucine-rich repeat signature 120 133 - -
Vivi1748g00002 999 PRINTS Leucine-rich repeat signature 238 251 - -
Vivi1748g00002 999 SMART LRR_typ_2 286 310 IPR003591 -
Vivi1748g00002 999 SMART LRR_typ_2 501 524 IPR003591 -
Vivi1748g00002 999 SMART LRR_typ_2 525 549 IPR003591 -
Vivi1748g00002 999 SMART LRR_typ_2 214 237 IPR003591 -
Vivi1748g00002 999 SMART LRR_typ_2 118 140 IPR003591 -
Vivi1748g00002 999 SMART LRR_typ_2 141 164 IPR003591 -
Vivi1748g00002 999 SMART LRR_typ_2 93 117 IPR003591 -
Vivi1748g00002 999 SMART LRR_typ_2 238 262 IPR003591 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1748g00002 20 999 Receptor kinase-like Gene Family AT1G28440 67.984 0.0 1373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi1748g00002 Pkinase 1.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1748g00002 - - gmx:100776936 1518.06