Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi173g00024 ATCACATCAACAACACCGTCATCTTATTTTCTTTATACTCTGGGTTTGAGTATCCCTTGTACTCCGGTGTTAAAAAAATCAGCAATTCTGGCTAATCCGTGGTGGGCCGATCAACAGGTAGGATTGTCTGGGGTGGTGGATCATCACCACCATCCATCAGACAATTCACCTGGTGTAAACAAACGCCACCACGCGGAACTTTTCATCAATGAAACCAAGAGAAGAGAAGAAGACGACGATGAAGAAAGAGAAGACGATGAACCAAAAGAAGGTGCGGTGGAAATCGGAAACAGAAGACCAAGAGGAAGACCACCAGGTTCAAAAAACAAACCAAAACCACCAATTTTCATAACAAGAGACAGTCCAAATTCACTAAAAAGCCATGTGATGGAAGTATCCCCCGGGGCCGATGTAGCCGAAAGCGTAGCTCAGTTTGCAAGAAGGCGACAGCGCGGAGTTTGTATCTTAAGCGGTAGCGGATCAGTAGCAAATGTTACCCTAAGACAACCAGCTGCACCAGGAGCTGTTGTAGCACTTCATGGAAGGTTCGAGATTCTATCGTTAACCGGAGCTTTTCTACCCGGTCCGTCTCCTCCCGGTGCTACCGGACTCACAGTTTACTTATCTGGTGGACAAGGGCAGGTTGTTGGTGGAAGTGTTGTTGGATCTTTGATTGCTGCTGGACCTGTCTTGGTTATCGCCGCTACTTTCGCTAACGCTACTTATGAAAGATTACCACTTGAAGAGGAAGAAGAGGATGATGGTGGGATCCATGGAGGACATCATGTTAATGGTAATAATAATAATAATTCATCTCCTCCTGGAATTGGAAGTAATGGCAACGGCAGCGGCGGAGGCGGTGAAGGTGGAGGTGGTGGGGGCCATATGCAGTCTGGCCTTCCAGATCCATCTTCTTTACCTTTGTATAATCTGCCACCAAATCTTCTGCCTAATGGTGGCCATGTGGGACATGAAGCTTTTCCATGGCCTCATGGAATTAGGCCACCTTTCTGA 1014 0.4704 ITSTTPSSYFLYTLGLSIPCTPVLKKSAILANPWWADQQVGLSGVVDHHHHPSDNSPGVNKRHHAELFINETKRREEDDDEEREDDEPKEGAVEIGNRRPRGRPPGSKNKPKPPIFITRDSPNSLKSHVMEVSPGADVAESVAQFARRRQRGVCILSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGAFLPGPSPPGATGLTVYLSGGQGQVVGGSVVGSLIAAGPVLVIAATFANATYERLPLEEEEEDDGGIHGGHHVNGNNNNNSSPPGIGSNGNGSGGGGEGGGGGGHMQSGLPDPSSLPLYNLPPNLLPNGGHVGHEAFPWPHGIRPPF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi173g00024 337 ProSiteProfiles PPC domain profile profile. 122 260 IPR005175 -
Vivi173g00024 337 Gene3D - 126 254 - -
Vivi173g00024 337 Pfam Plants and Prokaryotes Conserved (PCC) domain 127 238 IPR005175 -
Vivi173g00024 337 MobiDBLite consensus disorder prediction 248 316 - -
Vivi173g00024 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 65 331 IPR014476 GO:0003680
Vivi173g00024 337 MobiDBLite consensus disorder prediction 69 124 - -
Vivi173g00024 337 FunFam AT-hook motif nuclear-localized protein 125 252 - -
Vivi173g00024 337 SUPERFAMILY AF0104/ALDC/Ptd012-like 122 251 - -
Vivi173g00024 337 MobiDBLite consensus disorder prediction 262 279 - -
Vivi173g00024 337 CDD DUF296 126 208 IPR005175 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi173g00024 30 337 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 58.360 8.01e-102 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi173g00024 - - qsa:O6P43_021453 315.849