Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi173g00020 ATGTATAAATCAACAGCATCTGGATTTTTAACTTTCCTGCTTCTATTGTGTGTATCTGCAACTGCTAATGGATTTCCAAAATGCAACTGCGATGATGACACAAGCTGGTGGACTATTGAGAATATTCTAGAATGCCAGAAAATCGGAGATTTCTTAATCGCCATCGCGTATTTCTCAATCCCTATCGAGCTTCTCTATTTTATTAGTTGCTCAAACATTCCATTCAAATGGGTTCTTTTTCAGTTCCTTGCATTCATAGTCCTTTGTGGAATGACACATTTGTTGAATAGTTGGACTTATGGACCTCACACTTTTCAAACCATCGTGACACTGACTGTCTTGAAAGTCCTCACTGCAATGGTTTCATGTGCAACTGCCATAACATTGATCACTTTGATCCCTTTGCTTCTTAAAGTGAAGGTTCGAGAGTTTTTGCTCAAGCTTAAGACGAGGGAGCTTGGAATCGAGGTTGGTATGATCACGAAACAGAATGAGGCTGGAATGCATGTGAGAATGCTTACTCAAGAGATTAGAAAATCGCTCGATAGACATAAGATTCTGTATACTACTTTGGTTGAGCTGTCGAAAACTTTAGGGTTGCAGAATTGTGCTGTGTGGATGCCTAATGTTGATAAAACTGAAATGAGCCTCACTCATGAATTGAATGGGAGGAATGTTAACTCCTCTATACCGATTACTGATCCGGATGTTGTACGAGTTAAGGGAGATAATGTAGTTAACGTTATTGATTCTGATTCACCGCTTGCTTCTGCTAGTAGTGGAGTTTCTGTTGATGTAGGACCGGTTGCTGCAATCCGAATGCGAATGCTTCGTGTTAGCGATTTCAAAGGAGGAGCGTCAGAAGTAACGGAAGCTTGTTACGCGATACTTGTTTTGGTACTTCCTAGCGCAGAGGATAGATCTTGGAGCAATCAAGAGATGGAGATTATTAAAGTTGTTGCCGATCAGGTAACTGTGGCTCTTTCTCATGCTGCAATTCTCGAAGAATCGCAGCTCATGAGGGAGAAATTGGAGGAGCAAAACCAATCATTGCAACAGGAGAAAAGGAAGACTATGATGGCGAGTGAGGCTAGAGCGGTTTTTCAGAAAGTTATGAGTAATGGAATGGGAAGGCCAATGCATTCAGTTATGGGTTTGCTTTCAATGTTGCAAGATGAGAATTTGAAAAATGAACAGAAACTTATTGTGGATTCGATGGTAAGGACAAGCAGCGTTGTATCGAACTTGATGAACGATGCTATGGATAATTCGGATAGGGATGTTGGAAGTGGAAGATTTACTTTGGAGATGAAATGTTTTGGGTTACATAACATGTTGAAAGAAGCAGCTTGCATTGCTAAGTGTATGAGTTTATGTAAGGGTTATGGATTTAAGGTTGAGGTTGATAAATCCTTGCCTAACTATGTTATCGGCGATGAGAAGAGGGTCTTTCAAGTGATTTTGCACATGGTTAGGAACCTTATAGATGGTAACCACGGTGGAGGTATTCTTGTCTTTCGAGTTTTTGCAGAATCGGGAAGCCGAGGAAGGACTGATCAGGGATATGCAACTTGGAGACCAAGCTCGTCTAGCGGTGATGTAGATGTTAGATTTGAGATTGGGATCAATAGCAGTGATTCTGAATCCGAGACCTCAGCTTCTTCAGGCCGGCTTTCAGGTAGGACGCGTACGAGTGATCGGGCGTTCGATGAAAAGTTGAGCTTCATTAATTGCAAGAAGATAATCCAGTCAATGAAAGGGAGCATTCGGTCGGTACCAAACGCTAGAGGCTTTCCTCAAGTCATGACCCTGGCTCTACGGTTTCAGTTGCGTCGATCAATCGCTGTAACCATCCCCGAACCAGGAGAGAGTTCAGAGTCGTCGAGTTCAAATTCTTTGTTCCGTGGTCTGCAAGTCTTGTTGGCTGACAACGACGATGTTAATAGAGTAGTAACACGTAAATTTCTTCAGAAACTCGGCTGTGTTGTCACATCAGTTTCTTCCGGATTAGAATGTCTTAGCCTTATTGGACCTGCTGGTGGATCTCCCTTTGAAGTCATTCTTTTGGATCTTCACTTGCCTGATTTAGATGGATTTGAAGTTACTTCGAGGATCCGGAAGTTTAAAAGCCGTAATTGGCCTATCGTCGTTGCTTTGACAGCAAGCTCGGGAGAAGGTTTGCGGGAAAAATGTATGCATATTGGATTTAATGGAGTTATCCGAAAGCCGATTCTGTTGCAAGGATTCTCCGACGAACTTCGAAGAATCCTAAAGGGAAACTAG 2283 0.4227 MYKSTASGFLTFLLLLCVSATANGFPKCNCDDDTSWWTIENILECQKIGDFLIAIAYFSIPIELLYFISCSNIPFKWVLFQFLAFIVLCGMTHLLNSWTYGPHTFQTIVTLTVLKVLTAMVSCATAITLITLIPLLLKVKVREFLLKLKTRELGIEVGMITKQNEAGMHVRMLTQEIRKSLDRHKILYTTLVELSKTLGLQNCAVWMPNVDKTEMSLTHELNGRNVNSSIPITDPDVVRVKGDNVVNVIDSDSPLASASSGVSVDVGPVAAIRMRMLRVSDFKGGASEVTEACYAILVLVLPSAEDRSWSNQEMEIIKVVADQVTVALSHAAILEESQLMREKLEEQNQSLQQEKRKTMMASEARAVFQKVMSNGMGRPMHSVMGLLSMLQDENLKNEQKLIVDSMVRTSSVVSNLMNDAMDNSDRDVGSGRFTLEMKCFGLHNMLKEAACIAKCMSLCKGYGFKVEVDKSLPNYVIGDEKRVFQVILHMVRNLIDGNHGGGILVFRVFAESGSRGRTDQGYATWRPSSSSGDVDVRFEIGINSSDSESETSASSGRLSGRTRTSDRAFDEKLSFINCKKIIQSMKGSIRSVPNARGFPQVMTLALRFQLRRSIAVTIPEPGESSESSSSNSLFRGLQVLLADNDDVNRVVTRKFLQKLGCVVTSVSSGLECLSLIGPAGGSPFEVILLDLHLPDLDGFEVTSRIRKFKSRNWPIVVALTASSGEGLREKCMHIGFNGVIRKPILLQGFSDELRRILKGN 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi173g00020 760 ProSiteProfiles Response regulatory domain profile. 638 757 IPR001789 GO:0000160
Vivi173g00020 760 SMART REC_2 637 757 IPR001789 GO:0000160
Vivi173g00020 760 Pfam Response regulator receiver domain 639 744 IPR001789 GO:0000160
Vivi173g00020 760 SMART gaf_1 182 338 IPR003018 GO:0005515
Vivi173g00020 760 FunFam Ethylene receptor 4 331 425 - -
Vivi173g00020 760 Coils Coil 334 361 - -
Vivi173g00020 760 Gene3D - 637 760 - -
Vivi173g00020 760 SUPERFAMILY CheY-like 634 757 IPR011006 -
Vivi173g00020 760 Gene3D - 327 427 - -
Vivi173g00020 760 CDD HATPase_ETR2_ERS2-EIN4-like 472 606 - -
Vivi173g00020 760 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 25 758 - -
Vivi173g00020 760 Pfam GAF domain 182 328 IPR003018 GO:0005515
Vivi173g00020 760 PIRSF Ethylen_sen_hybr_HK 1 760 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vivi173g00020 760 Gene3D - 430 609 IPR036890 -
Vivi173g00020 760 SUPERFAMILY GAF domain-like 185 331 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi173g00020 23 758 Miscellaneous Gene Families AT3G04580 52.949 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi173g00020 GAF 1.7e-09 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi173g00020 K14509 - gmx:100802948 1059.28