Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi173g00019 ATGGCAAGATCAGATAGTACTACTTCAAGTGAAGAAAGTGATGATCAAGAAGAATCTATAGTAACCAATAAGAGATCTTATGATTGCACATTTTGTAAAAGAGGTTTCACTAATGCAAGAGCATTAGGAGGCCACATGAATATTCATAGAAAAGAGAGAAACAATTATAAAGCCAAACAAGGCACACCAAATAACTCCTCACCTTTTGTTCCAGGTGTTTCAAACCAAGCCTCAACATATTATAATTGCTGCATTTTGGAGCCTCCTATGAACTATGACATGTATATTCAACCATCAATAACCAACCCTAGTAATTCTCCACCTACTTTTCAATATGATTTTCTTAACACAAACTCACAATCTTTGTTAGGAAACAATTTGAGTCTCCAAATTGGTTCAGGTCATCATGAGGGTAACGATCATGTTTGGAGAGGAATGGAGAAAGATGGTGAAGGGGTGGACCTAGAGCTTAGGCTTGGTCATGATTCATACTCAAACTACTAA 504 0.3671 MARSDSTTSSEESDDQEESIVTNKRSYDCTFCKRGFTNARALGGHMNIHRKERNNYKAKQGTPNNSSPFVPGVSNQASTYYNCCILEPPMNYDMYIQPSITNPSNSPPTFQYDFLNTNSQSLLGNNLSLQIGSGHHEGNDHVWRGMEKDGEGVDLELRLGHDSYSNY 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi173g00019 167 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Vivi173g00019 167 SUPERFAMILY beta-beta-alpha zinc fingers 22 54 IPR036236 -
Vivi173g00019 167 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Vivi173g00019 167 Gene3D Classic Zinc Finger 4 70 - -
Vivi173g00019 167 PANTHER OS07G0101800 PROTEIN 5 162 - -
Vivi173g00019 167 MobiDBLite consensus disorder prediction 1 20 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi173g00019 25 161 C2H2 Transcription Factor Family AT4G17810 32.609 2.33e-14 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi173g00019 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi173g00019 - - mtr:25483021 235.728