Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1736g00001 ATGGCTTTCTTTCCATCAAATTTCATGCTTCAAACTTCTCATCAAGATGACCATCATCAACCTCCACCTTCACTCAACTCAATTATAACCTCATGTGCACCTCAAGATTATCATGGAGGAGTATCCTTTTTAGGAAAGAGATCTATGTCATTTTCAGGGATAGAGCTCGGAGAAGAAGCGAATGTCGAAGAAGAATTATCGGACGACGGATCGCAGTTAGGGGAGAAGAAGAGAAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAGAGTTTTGAGTTAGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGCTTGCAAGGGCTCTTGGACTTCAACCAAGACAAATTGCTATATGGTTTCAAAACAGAAGGGCTAGGTGGAAGACAAAACAGTTGGAGAAAGACTATGATGTTCTTAAAAGACAATATGATTCTGTTAAGGCTGATAATGATGCTCTTCAAGCTCAGAACCAGAAACTTCAGACCGAGATATTGGCACTGAAAAATAGAGAACCAACAGAATCAATCAACCTAAACAAAGAAACAGAAGGATCAAGCAGCAACAGAAGTGAAAACAGTTCAGAAATCAAGTTGGATATTTCAACCAGGACAACACAAGGAGCTATTGATAGTCCTTTATCCACTCAACAACAAACAAGCATAAACCTCTTCCCATCTTCTTCTAGACCAACACTTGTCCCTCATCAACTCTTTCAAACCAATTCAACAAGACAAGACATGAACCAGTGCCAGAAGATTGATCACATGGTTAAAGAAGAGAGTTTGAGTAACATGTTTTCCGCCATTGATGAGCAATCTGGATTATGGCCGTGGTTGGAGCAACAGCATTTCAATTGA 861 0.4007 MAFFPSNFMLQTSHQDDHHQPPPSLNSIITSCAPQDYHGGVSFLGKRSMSFSGIELGEEANVEEELSDDGSQLGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYDSVKADNDALQAQNQKLQTEILALKNREPTESINLNKETEGSSSNRSENSSEIKLDISTRTTQGAIDSPLSTQQQTSINLFPSSSRPTLVPHQLFQTNSTRQDMNQCQKIDHMVKEESLSNMFSAIDEQSGLWPWLEQQHFN 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1736g00001 286 CDD homeodomain 76 132 IPR001356 GO:0003677
Vivi1736g00001 286 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677
Vivi1736g00001 286 PRINTS Lambda-repressor HTH signature 102 111 IPR000047 GO:0003677
Vivi1736g00001 286 PRINTS Lambda-repressor HTH signature 111 127 IPR000047 GO:0003677
Vivi1736g00001 286 MobiDBLite consensus disorder prediction 179 218 - -
Vivi1736g00001 286 SUPERFAMILY Homeodomain-like 70 133 IPR009057 -
Vivi1736g00001 286 ProSitePatterns 'Homeobox' domain signature. 106 129 IPR017970 GO:0000981|GO:0006355
Vivi1736g00001 286 Gene3D - 68 137 - -
Vivi1736g00001 286 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 55 252 IPR045224 GO:0003700
Vivi1736g00001 286 SMART HOX_1 74 135 IPR001356 GO:0003677
Vivi1736g00001 286 MobiDBLite consensus disorder prediction 172 218 - -
Vivi1736g00001 286 Pfam Homeodomain 76 129 IPR001356 GO:0003677
Vivi1736g00001 286 FunFam Homeobox-leucine zipper protein ATHB-13 68 135 - -
Vivi1736g00001 286 Coils Coil 123 171 - -
Vivi1736g00001 286 Pfam Homeobox associated leucine zipper 131 171 IPR003106 GO:0006355|GO:0043565
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1736g00001 1 286 Homeobox Transcription Factor Family AT1G69780 62.626 1.79e-119 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi1736g00001 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1736g00001 K09338 - gmx:100801479 469.159