Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi172g00001 ATGTTGCAAGATGTTATCCACCCTCCATCACATGATGAACAACTATCCATTGATGAAATTTCAAGTCCAAATATTAGTGCACAAATTTTTGAACTTTGTGACCCTGATTTGTTCCAAGACTCTCTCCAACAAAATTCTGAAGTTACTTCTAGCTCAAATTGTTGTCATCATGAAGAAAACAACCTCAACAACATCAACAACAACAACAATAATAATAACAACTCTTCATATACCTTAAACAACATTTCACAAGCTTTAGATTTAGACAACAACATCAATAGCAATAGCAATAGTACTACAAGCACAACAAGCAACAATAACACAACAAACAATACCAATAATAGCCTTCCGATTATCTTTGATTCTCAACAAGATATCGACAATGACATATCGGCTTCGATAGACTTCACATCGTCGCAGTCTTTTCTCGTTCCGTCGCTTCTTCCAATCAATACTCATCAAGAACAGCAGTTTGATTTCTCTTCGACGCAACCTCATCATCAGCATCTTCAGTTGTCCACATGTTCGGGTTTGAAAGGACTGTCTTCGCAGTATCATCAGACTGATAATATTCCTGTTTCGGCTGCTGCGGGGCCTCTCATCGGTGGTTCGTTTGGTTCGGTTTTTGAAGATGATTGCATATCTTCGATTCCGTCTTATTCTCCTTCGTGTTCTTATCTTAGTAATGGATTAGGTGTGTATATGCCTCATGGAAATCTTGGGAGTGGTTTGTCTGGTGATAGTTCTGGCTTGTTTGGTGGAGGAATGATACTAGGTTCGGAAATGCAGACTCAAGACTTAGATTATCAAGGTGAAAATGGTGGAATTTATTGTACAGATTCTGTTCAGCAGGTGTTTAATCCTCAAGATTTTCAGGCACTTGGTACTGAGAATCACAAACTAGTAGCTGGAAATTCTGCCACTTTATCACCAGAAATCTCACATTTGGAGGACTCTACCTTAAAGGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAAAAGATTCATAGATATATGAAGAAGAGAAATGAAAGAAATTTCAGCAAGAAAATCAAGTATGCTTGCCGGAAAACTTTAGCAGATAGTCGGCCGCGAGTTAGAGGCAGATTTGCAAAGAATGATGAATTTGGCGAGAATCAAAGGCCAGCTTGTAGCAACCATGAAGATGATGATGAAATAGCTGTTAAAGAAGAAGATGATATGGTTGATTCCTCAGATATCTTTGCACATATAAGTGGACTTAACTCCTTCAAATGCAACTATTCAATCCAGTCTTTGATTTGA 1284 0.3808 MLQDVIHPPSHDEQLSIDEISSPNISAQIFELCDPDLFQDSLQQNSEVTSSSNCCHHEENNLNNINNNNNNNNNSSYTLNNISQALDLDNNINSNSNSTTSTTSNNNTTNNTNNSLPIIFDSQQDIDNDISASIDFTSSQSFLVPSLLPINTHQEQQFDFSSTQPHHQHLQLSTCSGLKGLSSQYHQTDNIPVSAAAGPLIGGSFGSVFEDDCISSIPSYSPSCSYLSNGLGVYMPHGNLGSGLSGDSSGLFGGGMILGSEMQTQDLDYQGENGGIYCTDSVQQVFNPQDFQALGTENHKLVAGNSATLSPEISHLEDSTLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDEFGENQRPACSNHEDDDEIAVKEEDDMVDSSDIFAHISGLNSFKCNYSIQSLI 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi172g00001 427 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 51 398 IPR045281 GO:0009909
Vivi172g00001 427 Pfam CCT motif 331 373 IPR010402 GO:0005515
Vivi172g00001 427 MobiDBLite consensus disorder prediction 90 116 - -
Vivi172g00001 427 ProSiteProfiles CCT domain profile. 331 373 IPR010402 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi172g00001 311 379 C2C2-CO-like Transcription Factor Family AT5G24930 39.130 3.77e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi172g00001 CCT 5.7e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi172g00001 - - gmx:100807304 491.886