Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi16g00048 ATGGATTTGAATTCTGGCTATCAAGAACTCCAACAAAACCAAAGGTTGCTTCGTTTCCGCTCTACAAGTTCTTCTGGTGCAAGTTCAAGCATGATTGTTGGTTCTTCTATGGGAATGGATCAACCAAGTGGTTCTTCTGCTGGTCATTTCTCCAACAACATCATCTCTTTTGAAAATGGTTACGATACTACGAAAGGTGTTGAAAACTATGATGGAGTGAATGAAAGTGATGGTGAACTTACTCTATCTATGAGCATATTGAAGAATCAAATCGGATTCTTACCAAACTCTTCTTCCTTGGGAACATTATCACAGAACTCCAAAATGGGGAGTGATGGTCATAAATTCTTTTATGATTATAATCATCAGAATGTAGAGGTAGGAAATCAAGTAAATACATTATCACATCACATGAGTTTGCCAAGAAAGTCATCAGAAATGTTTGTTATGGAGAATTTACATCAGTTCCCAGATTCTTCTGTTCCTAGCAGTATTAGAGCAAAGCGAGGCTGCGCAACGCATCCTAGAAGTGTCGCGGAAAGGGTAAGAAGAACTCGAATAAGTGACCGAATGAAAAAGTTGCAAGAGCTTGTTCCAAACATTGACAAGCAAACTTGCACATCAGAAATGTTGGAATTGGCTGCAGAGTACATTAAAGATCTTCAAAAACAATTAAAGATTATGAGTGCAAAAAGAGCTAAATGCAGATGCAAAAATCAGAAATGA 726 0.376 MDLNSGYQELQQNQRLLRFRSTSSSGASSSMIVGSSMGMDQPSGSSAGHFSNNIISFENGYDTTKGVENYDGVNESDGELTLSMSILKNQIGFLPNSSSLGTLSQNSKMGSDGHKFFYDYNHQNVEVGNQVNTLSHHMSLPRKSSEMFVMENLHQFPDSSVPSSIRAKRGCATHPRSVAERVRRTRISDRMKKLQELVPNIDKQTCTSEMLELAAEYIKDLQKQLKIMSAKRAKCRCKNQK 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi16g00048 241 Pfam Helix-loop-helix DNA-binding domain 177 222 IPR011598 GO:0046983
Vivi16g00048 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 221 IPR011598 GO:0046983
Vivi16g00048 241 Coils Coil 218 238 - -
Vivi16g00048 241 SMART finulus 177 227 IPR011598 GO:0046983
Vivi16g00048 241 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 34 236 - -
Vivi16g00048 241 MobiDBLite consensus disorder prediction 17 46 - -
Vivi16g00048 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 238 IPR036638 GO:0046983
Vivi16g00048 241 Gene3D - 172 241 IPR036638 GO:0046983
Vivi16g00048 241 FunFam Transcription factor bHLH130 family 172 240 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi16g00048 43 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 43.578 3.77e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi16g00048 HLH 5.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi16g00048 - - psat:127126267 395.971