Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi16g00039 ATGGCGTACGCAGCTCCTAAACCCACGAAGCCTGGTTTGGAGGAGTCCCAGGAGCAGATCCACAAAATCAGGATCACCCTCTCCTCCAAGCACGTCCAAAATCTCGAAAAGGTTTGCGGTGATTTGGTTCGTGGTGCTAAGGATAAGCGTCTTAGAGTGAAGGGACCTGTTAGGATGCCCACTAAAGTTCTTCACATCACTACCAGGAAGTCCCCTTGTGGAGAAGGTACCAACACCTGGGATAGATTTGAACTCCGTGTCCACAAGAGAGTCATTGACCTATACAGCTCTCCAGATGTTGTTAAGCAAATCACCTCCATCACCATTGAACCTGGTGTCGAGGTTGAAGTGACCATTGCAGATGCCTGA 369 0.4932 MAYAAPKPTKPGLEESQEQIHKIRITLSSKHVQNLEKVCGDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi16g00039 122 SMART Ribosomal_S10_2 24 118 IPR027486 -
Vivi16g00039 122 FunFam 40S ribosomal protein S20 7 121 - -
Vivi16g00039 122 SUPERFAMILY Ribosomal protein S10 22 119 IPR036838 -
Vivi16g00039 122 ProSitePatterns Ribosomal protein S10 signature. 46 61 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vivi16g00039 122 Gene3D Ribosomal protein S10 domain 7 121 IPR036838 -
Vivi16g00039 122 PRINTS Ribosomal protein S10 family signature 79 93 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vivi16g00039 122 PRINTS Ribosomal protein S10 family signature 22 35 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vivi16g00039 122 PRINTS Ribosomal protein S10 family signature 57 72 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vivi16g00039 122 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 10 121 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vivi16g00039 122 Hamap 30S ribosomal protein S10 [rpsJ]. 20 119 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vivi16g00039 122 Pfam Ribosomal protein S10p/S20e 24 118 IPR027486 -
Vivi16g00039 122 NCBIfam 30S ribosomal protein S10 21 119 IPR005729 GO:0003735|GO:0006412|GO:0015935
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi16g00039 1 122 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 88.525 6.72e-76 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi16g00039 K02969 - gmx:100500179 236.498