Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi16g00035 ATGGCTTCAAGTGTTGAAAAACCAAACCAAACCACTACTCAACTAGAACCACTCCCACCATCACAACATCATCAACATCATCATCATCATCACCATCATCAAAATAATCAAATTTCATTTGGAATGATGCAAGCTTCTTCATCAACCTCTCTCCCTGGAAACTTCATAAATAAAGATTCAGCTTATGATTTAGGTGAATTGGATCAAGCACTTTTTCTCTATCTTAATGGACAAACAGACACATCAAGTATTCAAGACCAAAAACAAAATTCAACATCAGGAATGAGGCCACCAACTCTTAACATTTTTCCTTCTGAGCCTATGCATGTAGAGCCATCATCTTCCAACTCAAAGGCTAACATGGAGTTAGTTTCTTCGGAAACAAGTGGATCAAGGAAAACCAATCTACCAAAACAAGTCTTCTCTGGCTCTGAACCATCCAAAACTGTCAAGCAGCCAGAGAGAAATCATGGTAAGGGTCCAACTTCAAGTTCTGAACAAGAAGGACCTAAAACACCAGATCCCAAGACACTGAGAAGACTTGCTCAGAATAGAGAAGCAGCTAGAAAAAGCAGGTTGAGAAAAAAGGCATATATTCAGCAGCTTGAGTCAAGCAGAATTAGGCTTAGTCAAATGGAACAAGAGCTACAGCGTGCTAGAAATCAAGGCATGTTCTTTGGTGGAGGTGCAGTCATGGGAGGAGAACAAAACCTTCCTATTTCAATGAACAGCATTAGCTCAGAGGCCGCGATGTTTGACGTGGAATATGCAAGGTGGATAGAGGAGCACCACCGTATAGTATGCGAACTAAGAGCGGCGGTTCAAGAGCACATTCATGAGGATGAGCTTAGAATGTTTGTGGACAAATTCTTGGCACAATTTGATCAACTAATGCATCTTAAGAGCTTACTTGCAAAAGCAGACATATTCCATCTAGTTTCTGGCATGTGGGTGACCCCAGCTGAACGTTGCTTCTTGTGGATTGGTGGATTCAAACCTTCTGAACTCATCAAGATTATTGTGAGTCAAATTGAGCCTGTAACGGAGCAACAAATAATGAGTATATACGGATTGCAACAATCTACACAAGAAGGAGAAGATGCTCTCTCACAAGGACTTGAAGCTTTGAATCAATCTATTTCAGAAACTATATCATCAGAACCATTGAGCTATCCTCCAAATATGAATAACTACATGGAACAATTGGCTAGGGCCATGAACAAACTTTCCACTCTTGAAAGTTTTGCTAGAGAGGCAGATAATCTACGACACCAAACCATTCACCGTCTGAATCAGATCCTAACGACGCGACAAGCAGCGAGATGTTTTGTTGCCATGGCGGAGTACTTCCATCGAATGCGAGCTTTGAGTTCTCTCTGGTTGGCACGCCCTCGTCAAGAATAG 1404 0.4152 MASSVEKPNQTTTQLEPLPPSQHHQHHHHHHHHQNNQISFGMMQASSSTSLPGNFINKDSAYDLGELDQALFLYLNGQTDTSSIQDQKQNSTSGMRPPTLNIFPSEPMHVEPSSSNSKANMELVSSETSGSRKTNLPKQVFSGSEPSKTVKQPERNHGKGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYIQQLESSRIRLSQMEQELQRARNQGMFFGGGAVMGGEQNLPISMNSISSEAAMFDVEYARWIEEHHRIVCELRAAVQEHIHEDELRMFVDKFLAQFDQLMHLKSLLAKADIFHLVSGMWVTPAERCFLWIGGFKPSELIKIIVSQIEPVTEQQIMSIYGLQQSTQEGEDALSQGLEALNQSISETISSEPLSYPPNMNNYMEQLARAMNKLSTLESFAREADNLRHQTIHRLNQILTTRQAARCFVAMAEYFHRMRALSSLWLARPRQE 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi16g00035 467 SMART brlzneu 172 245 IPR004827 GO:0003700|GO:0006355
Vivi16g00035 467 PANTHER TRANSCRIPTION FACTOR TGA9 89 466 - -
Vivi16g00035 467 MobiDBLite consensus disorder prediction 1 20 - -
Vivi16g00035 467 MobiDBLite consensus disorder prediction 156 171 - -
Vivi16g00035 467 SUPERFAMILY Leucine zipper domain 177 220 IPR046347 GO:0003700|GO:0006355
Vivi16g00035 467 ProSiteProfiles DOG1 domain profile. 249 463 IPR025422 GO:0006351|GO:0043565
Vivi16g00035 467 MobiDBLite consensus disorder prediction 81 99 - -
Vivi16g00035 467 MobiDBLite consensus disorder prediction 81 178 - -
Vivi16g00035 467 Coils Coil 195 222 - -
Vivi16g00035 467 Pfam bZIP transcription factor 176 211 IPR004827 GO:0003700|GO:0006355
Vivi16g00035 467 FunFam BZIP family transcription factor 175 224 - -
Vivi16g00035 467 Gene3D - 175 224 - -
Vivi16g00035 467 MobiDBLite consensus disorder prediction 1 36 - -
Vivi16g00035 467 CDD bZIP_HBP1b-like 176 228 - -
Vivi16g00035 467 Pfam Seed dormancy control 267 342 IPR025422 GO:0006351|GO:0043565
Vivi16g00035 467 MobiDBLite consensus disorder prediction 108 149 - -
Vivi16g00035 467 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 179 194 IPR004827 GO:0003700|GO:0006355
Vivi16g00035 467 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 174 218 IPR004827 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi16g00035 53 467 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 58.409 1.51e-175 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vivi16g00035 DOG1 1.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi16g00035 K14431 - gmx:100799713 679.478