Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi16g00028 ATGGATTCAGAAAACTCTTCTTCAGAAGAGTCCTCTCTAAATGGCTTGAAGTTTGGCCAAAGAATCTATTTTGAGGATTCATCTCTTGCAAACTCCTCTATTGCCAATGCCAATGCTAATGTTTCTTCTTCTAGTGGCTCCAAGAAAGGAAGAGGTGGTTCAGCTCAACACTCTCAACCTCCTAGGTGTCAAGTTGAGGGCTGTAAAGTAGATCTGAGTGATGCTAAAGCTTACTATTCTAGACACAAAGTTTGTAGCATGCACTCTAAGTCCCCTACTGTTACTGTTTCTGGTCTCCAACAAAGGTTTTGTCAACAGTGTAGCAGATTTCATCAGCTTGCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGACGACTAGCTGGTCATAATGAGCGTCGCAGAAAGCCCCCACCCAGCTCTCTCTTATCCTCACATTTTACGCGATTTTCTTCATCTGTTTTTGATAACAGCGGCGGAGGTGGCAGCTTCCTGATGGAATTCGCTTCACACCCGAAACTTAGCCTGAGAAATTCACTTCAATCATCTGGAAATCAAACCTCACCACTCGGTTGGTCTTGGCCGGGAAACTCGGAGTCGCCATCTGACAACTTTTTCTTGGAAGGTTCGGTGGGTGGGACAAGCTTCCCTGGTGCCAGGCATCCTTCCGAGGAAAGTTACACCGGAGTCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCTAGAAACACAGAACCAAGTCTTGGATTGAATAACATGCTGAATTTCAACGAGACACCACCCATGACACAACTAGCTACATCTTCTCAAGGTGTAGCCATGCATCAACTTCCAAACACTTCATGTTATTTCAAGGACATTGATGCTAGTAGCCTTTCACACGAGGTTGTCCCTGATATTGGTCTAGGTCACATGTCGCAGCCTCTCGATAGCCAACTTCATGGTGATCTTGATCTGTCGCAGCAGGGAAGGAGGCATTATATGGATGTAGAGCACTCCAGGGCCTATGAATCTTCTCAATGGTCACTTTAA 1050 0.4533 MDSENSSSEESSLNGLKFGQRIYFEDSSLANSSIANANANVSSSSGSKKGRGGSAQHSQPPRCQVEGCKVDLSDAKAYYSRHKVCSMHSKSPTVTVSGLQQRFCQQCSRFHQLAEFDQGKRSCRRRLAGHNERRRKPPPSSLLSSHFTRFSSSVFDNSGGGGSFLMEFASHPKLSLRNSLQSSGNQTSPLGWSWPGNSESPSDNFFLEGSVGGTSFPGARHPSEESYTGVTDSSCALSLLSNQTWGSRNTEPSLGLNNMLNFNETPPMTQLATSSQGVAMHQLPNTSCYFKDIDASSLSHEVVPDIGLGHMSQPLDSQLHGDLDLSQQGRRHYMDVEHSRAYESSQWSL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi16g00028 349 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 321 IPR044817 GO:0003677
Vivi16g00028 349 MobiDBLite consensus disorder prediction 38 61 - -
Vivi16g00028 349 Gene3D - 53 124 IPR036893 GO:0003677|GO:0005634
Vivi16g00028 349 FunFam Squamosa promoter-binding-like protein 14 54 124 - -
Vivi16g00028 349 MobiDBLite consensus disorder prediction 203 228 - -
Vivi16g00028 349 SUPERFAMILY SBT domain 61 142 IPR036893 GO:0003677|GO:0005634
Vivi16g00028 349 Pfam SBP domain 63 136 IPR004333 GO:0003677
Vivi16g00028 349 MobiDBLite consensus disorder prediction 38 63 - -
Vivi16g00028 349 ProSiteProfiles Zinc finger SBP-type profile. 60 137 IPR004333 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi16g00028 16 349 SBP-box Gene Family AT2G42200 43.052 8.80e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi16g00028 SBP 7.3e-33 No_clan