Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi16g00025 ATGGAAAACGTGAAGAAGAGAAAAATGGAGGAGACAGAAAACAAAAGTGATTCTTCTTCCAATATAGAGATTCGAAGTCTCGTTGAATGTATTCCTAAACCTCAACTTGTTGATCTTCTTTCTAAACTAGGGTGTCAAAATCCTTCAATTGCAGAACAAATCAAAACTATTGCAGCTCCTTATGTTGCGGCTTTCGATCGAAAGATTTTCGTTAGCAGCTTGAACTACGTAACAGAAACATCTACTTTGAGACAGAAATTTCAAGAGTATGGAGAAATTGAGAATGCAATTGTGATTCGTGATAGAGTCACAGGAAAATCCAAGGGCTATGGATTTGTCACTTACAAAGATATTCAATCAGTTAATAACGCATTGAGCAAACCTAAGATTGTTATTGATGGAGCATCGGTTGCATGTCGTCTAGCTGATGATGGCCAACGAGTTTCGCACAGGAAGCTTTTTATTGGAAACTTACCACCAATTTTTACAAATGAAAACCTGCACGACAAATTTAAGATGCATGGTGAAATAGAGGAAGCAATTGTATGCAAGAATCCAATTGGAGAATGGAAAAATCGATATGGATTTGTTACGTACAAGACAGTAGAGGCTGCAAAGAAGGCCATAGAATACAATGATCTTCATGATAGAAGTATGACTGTAAAATACGCTGATTCGCAGAGTCGGCCACCTTTGCCTGGAGGAGTAGCTTCAAGGGCAGTTCTACCTATGACTTCAGGTCCTGGATACGTGCGGCCTCAAAATGTTGATGTTAATTATGGTGCCCGAAATGGTTATACATACCCCCAAAGTGCGGCAGTACCTCCATATGCTGCACCTCCTTACCCCCAAACTGCTGCAGTACCACCATCTGCTGCACCTCCTTACCCCCAAAGTGCTGCAGTACCACCATATGCTGCACCTCCTTACCCCCAAAGTGCTGCAGTGCCACCATCTGCTGCACCTCCTTACCCCCAAAGTGCTGCAGTACCACCATATGCTGCACCACCTTATCAAACAAATGGACAGGGTCCTTATCCTCATGTTTCTGCAGTGACAGGCCAATTTGGGCATCAGTATTACTACAACAATCCCTATCCCAACCAATGA 1110 0.4252 MENVKKRKMEETENKSDSSSNIEIRSLVECIPKPQLVDLLSKLGCQNPSIAEQIKTIAAPYVAAFDRKIFVSSLNYVTETSTLRQKFQEYGEIENAIVIRDRVTGKSKGYGFVTYKDIQSVNNALSKPKIVIDGASVACRLADDGQRVSHRKLFIGNLPPIFTNENLHDKFKMHGEIEEAIVCKNPIGEWKNRYGFVTYKTVEAAKKAIEYNDLHDRSMTVKYADSQSRPPLPGGVASRAVLPMTSGPGYVRPQNVDVNYGARNGYTYPQSAAVPPYAAPPYPQTAAVPPSAAPPYPQSAAVPPYAAPPYPQSAAVPPSAAPPYPQSAAVPPYAAPPYQTNGQGPYPHVSAVTGQFGHQYYYNNPYPNQ 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi16g00025 369 MobiDBLite consensus disorder prediction 309 328 - -
Vivi16g00025 369 SUPERFAMILY RNA-binding domain, RBD 148 241 IPR035979 GO:0003676
Vivi16g00025 369 PANTHER GEO13361P1-RELATED 60 147 - -
Vivi16g00025 369 SMART rrm1_1 68 140 IPR000504 GO:0003723
Vivi16g00025 369 SMART rrm1_1 152 222 IPR000504 GO:0003723
Vivi16g00025 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 151 226 IPR000504 GO:0003723
Vivi16g00025 369 Gene3D - 146 231 IPR012677 -
Vivi16g00025 369 Gene3D - 64 145 IPR012677 -
Vivi16g00025 369 CDD RRM_SF 153 222 - -
Vivi16g00025 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 153 212 IPR000504 GO:0003723
Vivi16g00025 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 133 IPR000504 GO:0003723
Vivi16g00025 369 SUPERFAMILY RNA-binding domain, RBD 66 145 IPR035979 GO:0003676
Vivi16g00025 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 148 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi16g00025 23 142 C2H2 Transcription Factor Family AT2G19380 33.333 1.01e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi16g00025 K12741 - gmx:100776344 224.172